View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20563_low_16 (Length: 227)
Name: NF20563_low_16
Description: NF20563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20563_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 10265580 - 10265363
Alignment:
| Q |
1 |
ttagttagaatggacaaaaactaacacaattccattatgta----gagagtttcctgtccaaaatggcaaggccttaagcatcgtctacggcagcaaatt |
96 |
Q |
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| T |
10265580 |
ttagttagaatggacaaaaagtaacacaattccattatgtatgtagagagtttcctatccaaaatggcaaggccttaagcttcatctacagcagcaaatt |
10265481 |
T |
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| Q |
97 |
atcacaaacaaaagggggtgtgacagcaggaacagccacaacaaatgtgttcagaaatccaggattcaagcatgccatgaatgcatttaaatccgatagt |
196 |
Q |
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| T |
10265480 |
atcacaaacaaaagggggtgtgacagcaggaacagccacaacaaatgtgttcagaaatccaggattcaagcatgccatgaatgcatttaaatccgatagt |
10265381 |
T |
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| Q |
197 |
gtcagtccagatgaagta |
214 |
Q |
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|||||||||||||||||| |
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| T |
10265380 |
gtcagtccagatgaagta |
10265363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 10273273 - 10273060
Alignment:
| Q |
1 |
ttagttagaatggacaaaaactaacacaattccattatgtagagagtttcctgtccaaaatggcaaggccttaagcatcgtctacggcagcaaattatca |
100 |
Q |
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| T |
10273273 |
ttagttagaatggacaaaaactaacacaattacattatgtagagagtttcctatccaaaatggcaaggccttaagcttcatctacagcagcaaattatca |
10273174 |
T |
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| Q |
101 |
caaacaaaagggggtgtgacagcaggaacagccacaacaaatgtgttcagaaatccaggattcaagcatgccatgaatgcatttaaatccgatagtgtca |
200 |
Q |
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| T |
10273173 |
caaacaaaagggggtgtgacagcaggaacagccacagcaaatgtgttcagtcatccaggatacaggcataccatgcaggcattaaaatcccctagtgtca |
10273074 |
T |
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| Q |
201 |
gtccagatgaagta |
214 |
Q |
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| T |
10273073 |
gtccagatgaagta |
10273060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 2 - 177
Target Start/End: Complemental strand, 10243690 - 10243515
Alignment:
| Q |
2 |
tagttagaatggacaaaaactaacacaattccattatgtagagagtttcctgtccaaaatggcaaggccttaagcatcgtctacggcagcaaattatcac |
101 |
Q |
| |
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|||||||||| |||||| |||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| || ||||| |||||||| |||||| |
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| T |
10243690 |
tagttagaatttacaaaagctaacaaaattccattatgcagagagtttcctatccaaaatggcaaggccttaagcttcatctacagcagcaaactatcac |
10243591 |
T |
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| Q |
102 |
aaacaaaagggggtgtgacagcaggaacagccacaacaaatgtgttcagaaatccaggattcaagcatgccatgaa |
177 |
Q |
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| T |
10243590 |
aagctaaagggggtgtgacagtagcaacagccacagccaatgtattcagaaatccaggatacaagcatgcaatgaa |
10243515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 161
Target Start/End: Complemental strand, 10284514 - 10284355
Alignment:
| Q |
2 |
tagttagaatggacaaaaactaacacaattccattatgtagagagtttcctgtccaaaatggcaaggccttaagcatcgtctacggcagcaaattatcac |
101 |
Q |
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|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||| ||||| | | ||||| | ||||| | ||||| |
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| T |
10284514 |
tagttagaatggacaaaaactaacacaattccattgtgtagagagtttcctatccaaaatggaaagggcttaaactttatctacagtagcaagtcatcac |
10284415 |
T |
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| Q |
102 |
aaacaaaagggggtgtgacagcaggaacagccacaacaaatgtgttcagaaatccaggat |
161 |
Q |
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||||| || ||||| ||| || |||||||||||||||| | |||| ||||||||||| |
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| T |
10284414 |
aaacagaaaatggtgtaacattagcaacagccacaacaaatctattcacaaatccaggat |
10284355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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