View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20563_low_18 (Length: 216)
Name: NF20563_low_18
Description: NF20563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20563_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 5139466 - 5139268
Alignment:
| Q |
1 |
aaaaaacatcacgtcattagaaaaatttatgtggtaagattcctgtaatgtcgacattttgtgttactgagctgctggatgacccttggcacactcccac |
100 |
Q |
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| T |
5139466 |
aaaaaacgtcacgtcattaaaaaaatttatgtggtaagattcctgtaatgtcgacattttgtgttactgagctgctggatgacccttggcacactcccac |
5139367 |
T |
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| Q |
101 |
agcatgtagtatcagagcccgtgtttgacttgacaagaagcgggatcctggtgtttggatgaaggataggtggtgggagctcccacttgagtggaaaat |
199 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5139366 |
agcatgtagtatcagagcccttgtttgacttgacaagaagcgggatcctggtgtttggatgaaggataggtggtgggagctcacacttgagtggaaaat |
5139268 |
T |
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