View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20563_low_20 (Length: 202)
Name: NF20563_low_20
Description: NF20563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20563_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 48898379 - 48898195
Alignment:
| Q |
19 |
acaaacacacttgaaacgtgtaagagagttcacaggtagactcagcagaatttgaatgaccaattcatgaggaagatgcggtggattcttcttcctcttc |
118 |
Q |
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| T |
48898379 |
acaaacacacttgaaacgtgtaagagacttcacaggtagactcagcagaatttgaatgaccaattcatgaggaagatgcggtggattcttcttccttttc |
48898280 |
T |
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| Q |
119 |
tttaagc---------------gacggttgtttctcctcatttcggtcagcttgatttagggtttggtttagttgatagaattat |
188 |
Q |
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| T |
48898279 |
tttaagcgcctttgtcttgtgtgacggttgtttctcctcatttcggtcagcttgatttagggtttggcttagttgatagaattat |
48898195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 48870199 - 48870119
Alignment:
| Q |
19 |
acaaacacacttgaaacgtgtaagagagttcacaggtagactcagcagaatttgaatgaccaattcatgaggaagatgcgg |
99 |
Q |
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| T |
48870199 |
acaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcagatgcgg |
48870119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 48885885 - 48885805
Alignment:
| Q |
19 |
acaaacacacttgaaacgtgtaagagagttcacaggtagactcagcagaatttgaatgaccaattcatgaggaagatgcgg |
99 |
Q |
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| T |
48885885 |
acaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcagatgcgg |
48885805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 49044650 - 49044741
Alignment:
| Q |
19 |
acaaacacacttgaaacgtgtaagagagttcacaggtagactcagcagaatttgaatgaccaattcatgaggaagatgcggtggattcttct |
110 |
Q |
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| T |
49044650 |
acaaacacacttgaaacgtaaaagagacatcactggcaacctcagcagaataaggatgatcaagtcatgaggcagatacggtggattcttct |
49044741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 45366642 - 45366718
Alignment:
| Q |
19 |
acaaacacacttgaaacgtgtaagagagttcacaggtagactcagcagaatttgaatgaccaattcatgaggaagat |
95 |
Q |
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| T |
45366642 |
acaaacgcacttgaaacgtataagagacttcactggtaaccttagtaggatttggatcatcaattcatgaggaagat |
45366718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 4032337 - 4032408
Alignment:
| Q |
19 |
acaaacacacttgaaacgtgtaagagagttcacaggtagactcagcagaatttgaatgaccaattcatgagg |
90 |
Q |
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||||||||||||||||||| ||||||| |||| ||||| ||||| | ||||| |||| |||||||||||| |
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| T |
4032337 |
acaaacacacttgaaacgtataagagacttcattggtagtctcagtaagatttggatgatcaattcatgagg |
4032408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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