View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20563_low_3 (Length: 538)

Name: NF20563_low_3
Description: NF20563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20563_low_3
NF20563_low_3
[»] chr4 (21 HSPs)
chr4 (26-426)||(34935971-34936360)
chr4 (423-522)||(34936989-34937088)
chr4 (373-421)||(16391951-16391999)
chr4 (378-421)||(16391444-16391487)
chr4 (319-379)||(16200179-16200239)
chr4 (322-377)||(53551610-53551665)
chr4 (381-427)||(42184727-42184773)
chr4 (373-418)||(5048450-5048495)
chr4 (373-422)||(16200178-16200227)
chr4 (373-421)||(26185948-26185996)
chr4 (313-377)||(53019206-53019270)
chr4 (329-377)||(53508570-53508618)
chr4 (373-423)||(34459065-34459115)
chr4 (378-426)||(12333532-12333581)
chr4 (373-418)||(17659545-17659590)
chr4 (381-421)||(11643547-11643587)
chr4 (373-421)||(16392195-16392243)
chr4 (373-421)||(37381131-37381179)
chr4 (375-426)||(42673024-42673076)
chr4 (373-421)||(50459362-50459410)
chr4 (373-421)||(55131548-55131596)
[»] chr8 (6 HSPs)
chr8 (373-422)||(44282345-44282394)
chr8 (329-418)||(5039007-5039098)
chr8 (378-429)||(42149211-42149262)
chr8 (373-423)||(29730697-29730747)
chr8 (378-426)||(9427172-9427220)
chr8 (378-418)||(41178043-41178083)
[»] chr7 (13 HSPs)
chr7 (322-418)||(5212070-5212168)
chr7 (313-377)||(27234928-27234992)
chr7 (322-378)||(30404980-30405036)
chr7 (373-418)||(2738918-2738963)
chr7 (373-418)||(33471505-33471550)
chr7 (389-426)||(45967693-45967730)
chr7 (373-418)||(46470967-46471012)
chr7 (373-418)||(48135481-48135526)
chr7 (373-421)||(9503976-9504024)
chr7 (378-418)||(24733130-24733170)
chr7 (336-376)||(24936752-24936792)
chr7 (329-418)||(43232892-43232983)
chr7 (317-385)||(46774577-46774645)
[»] chr5 (10 HSPs)
chr5 (373-420)||(36137028-36137075)
chr5 (378-421)||(23118161-23118204)
chr5 (317-376)||(37554357-37554416)
chr5 (373-418)||(14416421-14416466)
chr5 (373-418)||(14571023-14571068)
chr5 (373-418)||(20367323-20367368)
chr5 (373-418)||(23994962-23995007)
chr5 (373-418)||(30489176-30489221)
chr5 (373-418)||(36329095-36329140)
chr5 (378-418)||(566308-566348)
[»] chr6 (9 HSPs)
chr6 (378-428)||(13397421-13397471)
chr6 (373-418)||(17854851-17854896)
chr6 (378-418)||(21980536-21980576)
chr6 (373-427)||(31872854-31872908)
chr6 (378-426)||(3586014-3586063)
chr6 (373-426)||(13397496-13397549)
chr6 (345-418)||(7246921-7246996)
chr6 (373-421)||(8029437-8029485)
chr6 (373-421)||(30669087-30669135)
[»] chr3 (8 HSPs)
chr3 (373-421)||(23005027-23005075)
chr3 (373-427)||(47931769-47931823)
chr3 (375-421)||(51859130-51859176)
chr3 (373-418)||(8126210-8126255)
chr3 (373-418)||(16294813-16294858)
chr3 (373-418)||(51256647-51256692)
chr3 (378-422)||(23783311-23783355)
chr3 (378-418)||(50623121-50623161)
[»] chr1 (14 HSPs)
chr1 (329-418)||(17988244-17988329)
chr1 (378-420)||(26453065-26453107)
chr1 (373-423)||(28978535-28978585)
chr1 (373-426)||(47293256-47293310)
chr1 (388-426)||(47293368-47293406)
chr1 (373-422)||(39015574-39015623)
chr1 (373-418)||(40328952-40328997)
chr1 (373-418)||(46812981-46813026)
chr1 (373-418)||(47011259-47011304)
chr1 (373-418)||(52879899-52879944)
chr1 (317-377)||(1252141-1252201)
chr1 (378-418)||(42914551-42914591)
chr1 (378-422)||(47293195-47293239)
chr1 (373-421)||(51469135-51469183)
[»] chr2 (6 HSPs)
chr2 (327-377)||(34466168-34466218)
chr2 (373-418)||(29771733-29771778)
chr2 (373-418)||(32473486-32473531)
chr2 (378-426)||(35024423-35024472)
chr2 (381-421)||(604869-604909)
chr2 (373-421)||(31596809-31596857)
[»] scaffold0110 (2 HSPs)
scaffold0110 (373-418)||(10167-10212)
scaffold0110 (373-418)||(17904-17949)
[»] scaffold0063 (1 HSPs)
scaffold0063 (373-426)||(54641-54694)
[»] scaffold0531 (1 HSPs)
scaffold0531 (373-421)||(7018-7066)


Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 26 - 426
Target Start/End: Original strand, 34935971 - 34936360
Alignment:
Q  26 atatgattgtgtaacttttttgaataaagtctataatgcaatgtaatgttgttaattttacatgttgtagcaaaaatactctcaaagatttatgtcttca 125  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||    
T  34935971 atatcattgtgtaacttttttgaataaagtctctaatgcaatgtaatgttgttaattttacatgttgtagcaaaaatactctcaaa------tgtcttca 34936064  T
Q  126 ttaaaaattggatgtcttaaagttacatactctcacatctcaagagtcaagatttatgaacaaggtaaaaacatgtacaaaagtcaatggttttactggc 225  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  34936065 ttaaaaattggatgtcttaaagttacatactctcaaatctcaagagtcaagattcatgaacaaggtaaaaacatgtacaaaagtcaatgattttactggc 34936164  T
Q  226 cctgtcttgcctcagaagcaaagtaagaaattactaaccgttaggggggcatgcttatgatacatgtgtctt-aaaggtattccatcagttgctaattat 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34936165 cctgtcttgcctcagaagcaaagtaagaaattactaaccgttaggggggcatgcttatgatacatgtgtcttaaaaggtattccatcagttgctaattat 34936264  T
Q  325 aggtaaatttaactttctaagttcattcagttactgatgcatgtggttcatatatcattaactgaatgaatctaaaaaattaaatttgtttataattgac 424  Q
    |||||||||||||| ||||||||||||||||||      |||||||| |||| ||||||||||||||||||||||||| |||||||| ||||||||||||    
T  34936265 aggtaaatttaactatctaagttcattcagtta------catgtggtccatacatcattaactgaatgaatctaaaaagttaaatttatttataattgac 34936358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 423 - 522
Target Start/End: Original strand, 34936989 - 34937088
Alignment:
Q  423 acaataaagtgttcaaaataaatccaaaacgattatgatgcccaacaaaaggaaaaagaaatactttttggtaaatttgtatccgtcataacacgtattt 522  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||    
T  34936989 acaataaagtgttcaaaataaatccaaaacgattatgatgcccaacaaaaggaaaaagaaatactttttggtttatttgtatcagtcataacacgtattt 34937088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 16391999 - 16391951
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttataatt 421  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  16391999 catatatcattaattgaatgaacctaaaaaattaaatttgtttataatt 16391951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 421
Target Start/End: Complemental strand, 16391487 - 16391444
Alignment:
Q  378 atcattaactgaatgaatctaaaaaattaaatttgtttataatt 421  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  16391487 atcattaattgaatgaatctaaaaaattaaatttgtttataatt 16391444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 379
Target Start/End: Original strand, 16200179 - 16200239
Alignment:
Q  319 aattataggtaaatttaactttctaagttcattcagttactgatgcatgtggttcatatat 379  Q
    ||||||| | |||||||||||| || ||||||||||||| ||||| |||||||||||||||    
T  16200179 aattataagcaaatttaactttttaggttcattcagttaatgatgtatgtggttcatatat 16200239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 322 - 377
Target Start/End: Original strand, 53551610 - 53551665
Alignment:
Q  322 tataggtaaatttaactttctaagttcattcagttactgatgcatgtggttcatat 377  Q
    |||| |||||||| |||||||||||||||||| ||| ||||| |||||||||||||    
T  53551610 tataagtaaatttgactttctaagttcattcaattaatgatgtatgtggttcatat 53551665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 427
Target Start/End: Original strand, 42184727 - 42184773
Alignment:
Q  381 attaactgaatgaatctaaaaaattaaatttgtttataattgacaat 427  Q
    ||||| ||||||||||||||||||||||||| ||||||||| |||||    
T  42184727 attaattgaatgaatctaaaaaattaaatttatttataattaacaat 42184773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 373 - 418
Target Start/End: Complemental strand, 5048495 - 5048450
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    ||||||||||||| | |||||||||||||||| |||||||||||||    
T  5048495 catatatcattaattaaatgaatctaaaaaataaaatttgtttata 5048450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 373 - 422
Target Start/End: Complemental strand, 16200227 - 16200178
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttataattg 422  Q
    |||| ||||||||||||||||| ||||||| ||||||||| |||||||||    
T  16200227 catacatcattaactgaatgaacctaaaaagttaaatttgcttataattg 16200178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 421
Target Start/End: Original strand, 26185948 - 26185996
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttataatt 421  Q
    ||||||||||||| |||||||| ||||||| | ||||||||||||||||    
T  26185948 catatatcattaaatgaatgaacctaaaaagtaaaatttgtttataatt 26185996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 377
Target Start/End: Complemental strand, 53019270 - 53019206
Alignment:
Q  313 gttgctaattataggtaaatttaactttctaagttcattcagttactgatgcatgtggttcatat 377  Q
    ||||||||||||| | |||||||||||| |||||||||||| ||| ||||   ||||||||||||    
T  53019270 gttgctaattataagcaaatttaactttttaagttcattcaattaatgatatgtgtggttcatat 53019206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 53508618 - 53508570
Alignment:
Q  329 aaatttaactttctaagttcattcagttactgatgcatgtggttcatat 377  Q
    |||||| |||||||||||||||||| ||| ||||| |||||||||||||    
T  53508618 aaatttgactttctaagttcattcaattaatgatgtatgtggttcatat 53508570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 423
Target Start/End: Original strand, 34459065 - 34459115
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttataattga 423  Q
    ||||||||||||| |||||||| ||||||| | ||||||| ||||||||||    
T  34459065 catatatcattaattgaatgaacctaaaaattcaaatttgcttataattga 34459115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 426
Target Start/End: Complemental strand, 12333581 - 12333532
Alignment:
Q  378 atcattaactgaatgaatctaaaaaattaaatttgt-ttataattgacaa 426  Q
    |||||||||||||| |||||||||||| |||||| | |||||||||||||    
T  12333581 atcattaactgaattaatctaaaaaatcaaatttttcttataattgacaa 12333532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Original strand, 17659545 - 17659590
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    ||||||||||||| |||||||||||||||| | ||||||| |||||    
T  17659545 catatatcattaattgaatgaatctaaaaagtaaaatttgcttata 17659590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 421
Target Start/End: Complemental strand, 11643587 - 11643547
Alignment:
Q  381 attaactgaatgaatctaaaaaattaaatttgtttataatt 421  Q
    |||||||||||||||||||||||| ||||||  ||||||||    
T  11643587 attaactgaatgaatctaaaaaatgaaatttacttataatt 11643547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 16392243 - 16392195
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttataatt 421  Q
    |||| ||||||||  |||||||| ||||||||||||||| |||||||||    
T  16392243 catacatcattaatcgaatgaatttaaaaaattaaatttatttataatt 16392195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 421
Target Start/End: Original strand, 37381131 - 37381179
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttataatt 421  Q
    ||||||||||||| |||| ||||||||||| | |||||| |||||||||    
T  37381131 catatatcattaattgaacgaatctaaaaagtcaaatttatttataatt 37381179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 42673024 - 42673076
Alignment:
Q  375 tatatcattaactgaatgaatctaaaaaatt-aaatttgtttataattgacaa 426  Q
    ||||||||||| |||||||||  |||||||| ||||||| |||||||||||||    
T  42673024 tatatcattaattgaatgaataaaaaaaattaaaatttgcttataattgacaa 42673076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 50459410 - 50459362
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttataatt 421  Q
    ||||||||||||| | ||||||| |||| |||||||||| |||||||||    
T  50459410 catatatcattaattaaatgaatttaaataattaaatttatttataatt 50459362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 55131596 - 55131548
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttataatt 421  Q
    |||| |||||||| |||||||| ||||||| | ||||||||||||||||    
T  55131596 catacatcattaattgaatgaacctaaaaagtcaaatttgtttataatt 55131548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 422
Target Start/End: Original strand, 44282345 - 44282394
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttataattg 422  Q
    |||| |||||||| |||||||||||||||||||||||||| |||||||||    
T  44282345 catacatcattaattgaatgaatctaaaaaattaaatttgcttataattg 44282394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 418
Target Start/End: Original strand, 5039007 - 5039098
Alignment:
Q  329 aaatttaactttctaagttcattcagttactgatgcatgtggttcatat--atcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||||| ||||| ||  |||||||| ||| ||||| |||||||||||||  |||||||| ||||||||  |||||| | |||||||||||||    
T  5039007 aaattttactttttattttcattcaattaatgatgtatgtggttcatatacatcattaattgaatgaaaataaaaagtaaaatttgtttata 5039098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 429
Target Start/End: Original strand, 42149211 - 42149262
Alignment:
Q  378 atcattaactgaatgaatctaaaaaattaaatttgtttataattgacaataa 429  Q
    |||||||| ||||||||  |||||||| ||||||| ||||||||||||||||    
T  42149211 atcattaattgaatgaacataaaaaatgaaatttgcttataattgacaataa 42149262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 423
Target Start/End: Complemental strand, 29730747 - 29730697
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttataattga 423  Q
    |||| |||||||| | |||||||| ||||||||||||||| ||||||||||    
T  29730747 catacatcattaattaaatgaatccaaaaaattaaatttgcttataattga 29730697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 426
Target Start/End: Complemental strand, 9427220 - 9427172
Alignment:
Q  378 atcattaactgaatgaatctaaaaaattaaatttgtttataattgacaa 426  Q
    |||||| | |||||||||||||||| | || ||||||||||||||||||    
T  9427220 atcattgattgaatgaatctaaaaattaaagtttgtttataattgacaa 9427172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 418
Target Start/End: Original strand, 41178043 - 41178083
Alignment:
Q  378 atcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||||||| |||||||||||||||| | |||||||||||||    
T  41178043 atcattaattgaatgaatctaaaaagtcaaatttgtttata 41178083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 322 - 418
Target Start/End: Complemental strand, 5212168 - 5212070
Alignment:
Q  322 tataggtaaatttaactttctaagttcattcagttactgatgcatgtggttcatata--tcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||| ||||| || ||||| || ||||||||| ||| ||||| |||||||||| |||  ||||||| |||||||||||||||||| || |||| |||||    
T  5212168 tataagtaaaattcactttttaggttcattcatttaatgatgtatgtggttcacatacatcattaaatgaatgaatctaaaaaatgaattttggttata 5212070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 377
Target Start/End: Complemental strand, 27234992 - 27234928
Alignment:
Q  313 gttgctaattataggtaaatttaactttctaagttcattcagttactgatgcatgtggttcatat 377  Q
    ||||||||||||| |||||||| ||||| || ||||||||| ||| ||||  |||||||||||||    
T  27234992 gttgctaattataagtaaatttgactttttaggttcattcaattaatgatatatgtggttcatat 27234928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 30404980 - 30405036
Alignment:
Q  322 tataggtaaatttaactttctaagttcattcagttactgatgcatgtggttcatata 378  Q
    |||| |||||||||||||| || ||||||||| ||| ||||| ||||||||||||||    
T  30404980 tataagtaaatttaactttttaggttcattcaattaatgatgtatgtggttcatata 30405036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Original strand, 2738918 - 2738963
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||| |||||||| |||||||||||||||||| || ||||||||||    
T  2738918 catacatcattaaatgaatgaatctaaaaaatcaattttgtttata 2738963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Complemental strand, 33471550 - 33471505
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||| |||||||| |||||||||||||||||| ||||||| |||||    
T  33471550 catacatcattaattgaatgaatctaaaaaataaaatttgcttata 33471505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 426
Target Start/End: Original strand, 45967693 - 45967730
Alignment:
Q  389 aatgaatctaaaaaattaaatttgtttataattgacaa 426  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  45967693 aatgaatttaaaaagttaaatttgtttataattgacaa 45967730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Complemental strand, 46471012 - 46470967
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    ||||||||||||| |||||||||||||||  | |||||||||||||    
T  46471012 catatatcattaattgaatgaatctaaaacctaaaatttgtttata 46470967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Complemental strand, 48135526 - 48135481
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    ||||||||||||| |||||||||||||||| | ||||||| |||||    
T  48135526 catatatcattaaatgaatgaatctaaaaagtaaaatttgcttata 48135481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 421
Target Start/End: Original strand, 9503976 - 9504024
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttataatt 421  Q
    |||| |||||||| | |||||||||||||| ||||||||| ||||||||    
T  9503976 catacatcattaattaaatgaatctaaaaagttaaatttgcttataatt 9504024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 24733170 - 24733130
Alignment:
Q  378 atcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||||||| |||||||| ||||||||||||||||| |||||    
T  24733170 atcattaattgaatgaacctaaaaaattaaatttgcttata 24733130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 24936792 - 24936752
Alignment:
Q  336 actttctaagttcattcagttactgatgcatgtggttcata 376  Q
    ||||| |||||||||||||||| ||||| ||||||||||||    
T  24936792 actttttaagttcattcagttaatgatgtatgtggttcata 24936752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 418
Target Start/End: Complemental strand, 43232983 - 43232892
Alignment:
Q  329 aaatttaactttctaagttcattcagttactgatgcatgtggttcatata--tcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||||| ||||| || ||||||||| ||| ||||| || |||| ||||||  ||||||| |||||||| |||| || | |||||||||||||    
T  43232983 aaattttactttttaggttcattcaattaatgatgtatatggtccatatacatcattaattgaatgaacctaagaagtaaaatttgtttata 43232892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 385
Target Start/End: Complemental strand, 46774645 - 46774577
Alignment:
Q  317 ctaattataggtaaatttaactttctaagttcattcagttactgatgcatgtggttcatatatcattaa 385  Q
    |||| |||| |||||||| || || || ||||||||| ||| ||||| |||||||||||| ||||||||    
T  46774645 ctaaatataagtaaattttaccttttaggttcattcaattattgatgtatgtggttcatacatcattaa 46774577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 420
Target Start/End: Complemental strand, 36137075 - 36137028
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttataat 420  Q
    |||| |||||||| |||||||||||||||| |||||||||||||||||    
T  36137075 catacatcattaattgaatgaatctaaaaagttaaatttgtttataat 36137028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 421
Target Start/End: Complemental strand, 23118204 - 23118161
Alignment:
Q  378 atcattaactgaatgaatctaaaaaattaaatttgtttataatt 421  Q
    |||||||| |||||||| ||||||||| ||||||||||||||||    
T  23118204 atcattaattgaatgaacctaaaaaataaaatttgtttataatt 23118161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 37554357 - 37554416
Alignment:
Q  317 ctaattataggtaaatttaactttctaagttcattcagttactgatgcatgtggttcata 376  Q
    |||| |||| |||||||| ||||| |||||||||||| ||| ||||| ||||||||||||    
T  37554357 ctaaatataagtaaattttactttttaagttcattcaattaatgatgtatgtggttcata 37554416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Complemental strand, 14416466 - 14416421
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||| |||||||| |||||||||||||||||| ||||||| |||||    
T  14416466 catacatcattaattgaatgaatctaaaaaataaaatttgcttata 14416421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Complemental strand, 14571068 - 14571023
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||| |||||||| |||||||||||||||||| ||||||| |||||    
T  14571068 catacatcattaattgaatgaatctaaaaaataaaatttgcttata 14571023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Complemental strand, 20367368 - 20367323
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||| |||||||| |||||||||||||||| | |||||||||||||    
T  20367368 catacatcattaattgaatgaatctaaaaagtaaaatttgtttata 20367323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Complemental strand, 23995007 - 23994962
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||| |||||||| |||||||| ||||||||| |||||||||||||    
T  23995007 catacatcattaattgaatgaacctaaaaaataaaatttgtttata 23994962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Original strand, 30489176 - 30489221
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    ||||||||||||| ||||||||| |||||||| ||||||| |||||    
T  30489176 catatatcattaattgaatgaatttaaaaaataaaatttgcttata 30489221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Complemental strand, 36329140 - 36329095
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    ||||||||||||| |||||||| ||||||||| |||||| ||||||    
T  36329140 catatatcattaattgaatgaacctaaaaaatcaaatttatttata 36329095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 566348 - 566308
Alignment:
Q  378 atcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||||||| |||||||||||||||||| || ||||||||||    
T  566348 atcattaaatgaatgaatctaaaaaatgaattttgtttata 566308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 428
Target Start/End: Complemental strand, 13397471 - 13397421
Alignment:
Q  378 atcattaactgaatgaatctaaaaaattaaatttgtttataattgacaata 428  Q
    |||||||| ||||| |||||||||||| |||||||||||||||| ||||||    
T  13397471 atcattaattgaataaatctaaaaaatcaaatttgtttataattaacaata 13397421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 373 - 418
Target Start/End: Complemental strand, 17854896 - 17854851
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||| |||||||| |||||||||||||||||| |||||||||||||    
T  17854896 catacatcattaattgaatgaatctaaaaaataaaatttgtttata 17854851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 21980576 - 21980536
Alignment:
Q  378 atcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||||||| ||||||||||||||||||||| ||||||||||    
T  21980576 atcattaaatgaatgaatctaaaaaattaattttgtttata 21980536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 427
Target Start/End: Complemental strand, 31872908 - 31872854
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttataattgacaat 427  Q
    |||| |||||||| |||||||| ||||||| ||||||||  ||||||||||||||    
T  31872908 catacatcattaattgaatgaacctaaaaatttaaattttcttataattgacaat 31872854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 426
Target Start/End: Complemental strand, 3586063 - 3586014
Alignment:
Q  378 atcattaactgaatgaatctaaaaaattaaa-tttgtttataattgacaa 426  Q
    |||||||| | |||||||||||||| ||||| ||||||||||||||||||    
T  3586063 atcattaattaaatgaatctaaaaatttaaaatttgtttataattgacaa 3586014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 426
Target Start/End: Original strand, 13397496 - 13397549
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttataattgacaa 426  Q
    |||| ||| |||| |||||||| |||| || |||||||||||||||||||||||    
T  13397496 catacatctttaattgaatgaacctaagaatttaaatttgtttataattgacaa 13397549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 418
Target Start/End: Original strand, 7246921 - 7246996
Alignment:
Q  345 gttcattcagttactgatgcatgtggttca--tatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    ||||||||| ||| ||||| ||||||| ||  ||||| ||||| |||||||| |||||||||||| ||| ||||||    
T  7246921 gttcattcaattaatgatgtatgtggtccacatatattattaattgaatgaacctaaaaaattaattttatttata 7246996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 421
Target Start/End: Original strand, 8029437 - 8029485
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttataatt 421  Q
    |||| |||||||| |||||||||||||||| | |||||| |||||||||    
T  8029437 cataaatcattaattgaatgaatctaaaaagtcaaatttttttataatt 8029485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 30669135 - 30669087
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttataatt 421  Q
    |||| |||||||| | |||||||||||||||| || |||||||||||||    
T  30669135 catacatcattaattaaatgaatctaaaaaatcaattttgtttataatt 30669087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 23005075 - 23005027
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttataatt 421  Q
    ||||||||||||| ||||| || ||||||||||||||||||||| ||||    
T  23005075 catatatcattaattgaataaacctaaaaaattaaatttgtttagaatt 23005027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 427
Target Start/End: Original strand, 47931769 - 47931823
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttataattgacaat 427  Q
    |||| |||||||| ||||| || ||||||||||||||||| ||||||||| ||||    
T  47931769 catacatcattaattgaataaacctaaaaaattaaatttgcttataattggcaat 47931823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 51859130 - 51859176
Alignment:
Q  375 tatatcattaactgaatgaatctaaaaaattaaatttgtttataatt 421  Q
    ||||||||||| |||||||||  ||||||||||||||| ||||||||    
T  51859130 tatatcattaattgaatgaataaaaaaaattaaatttgcttataatt 51859176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Original strand, 8126210 - 8126255
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    ||||||||||||| |||||||| ||||||||| ||||||| |||||    
T  8126210 catatatcattaattgaatgaacctaaaaaataaaatttgcttata 8126255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Complemental strand, 16294858 - 16294813
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||| |||||||| |||||||| ||||||||| |||||||||||||    
T  16294858 catacatcattaattgaatgaacctaaaaaataaaatttgtttata 16294813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Original strand, 51256647 - 51256692
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    ||||||| |||||||||||||||||||||| | ||||||| |||||    
T  51256647 catatattattaactgaatgaatctaaaaagtaaaatttgcttata 51256692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 23783355 - 23783311
Alignment:
Q  378 atcattaactgaatgaatctaaaaaattaaatttgtttataattg 422  Q
    |||||||| ||||||||| |||| ||||||||||| |||||||||    
T  23783355 atcattaattgaatgaatttaaacaattaaatttgcttataattg 23783311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 418
Target Start/End: Original strand, 50623121 - 50623161
Alignment:
Q  378 atcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||||||| |||||||||||||||||| ||||||| |||||    
T  50623121 atcattaattgaatgaatctaaaaaataaaatttgcttata 50623161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 418
Target Start/End: Original strand, 17988244 - 17988329
Alignment:
Q  329 aaatttaactttctaagttcattcagttactgatgcatgtggttcatatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||||| ||||| || ||||||||| ||| ||||| ||||||||||||    ||||| |||||||| ||||||| | |||||||||||||    
T  17988244 aaattttactttttaggttcattcaattaatgatgtatgtggttcata----attaattgaatgaacctaaaaagtaaaatttgtttata 17988329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 420
Target Start/End: Original strand, 26453065 - 26453107
Alignment:
Q  378 atcattaactgaatgaatctaaaaaattaaatttgtttataat 420  Q
    |||||||| |||||||||||||||||||| ||||| |||||||    
T  26453065 atcattaattgaatgaatctaaaaaattacatttgcttataat 26453107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 423
Target Start/End: Original strand, 28978535 - 28978585
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttataattga 423  Q
    ||||||||||||| |||||||||| | ||||||||||||  ||||||||||    
T  28978535 catatatcattaattgaatgaatcgataaaattaaattttcttataattga 28978585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 426
Target Start/End: Complemental strand, 47293310 - 47293256
Alignment:
Q  373 catatatcattaactgaatgaatctaa-aaaattaaatttgtttataattgacaa 426  Q
    |||| |||||||| ||||||||||||| ||||| ||||||||||||| |||||||    
T  47293310 catacatcattaattgaatgaatctaaaaaaatcaaatttgtttatagttgacaa 47293256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 426
Target Start/End: Original strand, 47293368 - 47293406
Alignment:
Q  388 gaatgaatctaaaaaattaaatttgtttataattgacaa 426  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  47293368 gaatgaatctaaaaagttaaatttgcttataattgacaa 47293406  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 422
Target Start/End: Complemental strand, 39015623 - 39015574
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttataattg 422  Q
    |||| |||||||| |||||||| ||||||| | |||||||||||||||||    
T  39015623 catacatcattaattgaatgaacctaaaaagtcaaatttgtttataattg 39015574  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Original strand, 40328952 - 40328997
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||| |||||||| |||||||||||||||| | |||||||||||||    
T  40328952 catacatcattaattgaatgaatctaaaaagtaaaatttgtttata 40328997  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Original strand, 46812981 - 46813026
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||| |||||||| ||||||||| |||||||| |||||||||||||    
T  46812981 catacatcattaattgaatgaatttaaaaaataaaatttgtttata 46813026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Complemental strand, 47011304 - 47011259
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    ||||||||||||| |||||||| ||||||| | |||||||||||||    
T  47011304 catatatcattaattgaatgaacctaaaaagtaaaatttgtttata 47011259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Complemental strand, 52879944 - 52879899
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||| |||||||| ||||||||||||||||| |||||||| |||||    
T  52879944 catacatcattaattgaatgaatctaaaaaactaaatttgcttata 52879899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 377
Target Start/End: Original strand, 1252141 - 1252201
Alignment:
Q  317 ctaattataggtaaatttaactttctaagttcattcagttactgatgcatgtggttcatat 377  Q
    ||||||||| | ||| |||||||| || ||||||||| ||| ||||| |||||||||||||    
T  1252141 ctaattataagcaaaattaactttttaggttcattcaattaatgatgtatgtggttcatat 1252201  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 42914591 - 42914551
Alignment:
Q  378 atcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||||||| |||||||||||||||||| || ||||||||||    
T  42914591 atcattaaatgaatgaatctaaaaaatgaattttgtttata 42914551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 47293239 - 47293195
Alignment:
Q  378 atcattaactgaatgaatctaaaaaattaaatttgtttataattg 422  Q
    |||||||| | |||||||||||||||||||||||  |||||||||    
T  47293239 atcattaattaaatgaatctaaaaaattaaatttacttataattg 47293195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 421
Target Start/End: Original strand, 51469135 - 51469183
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttataatt 421  Q
    ||||||||||||| ||||| || ||||||||| |||||| |||||||||    
T  51469135 catatatcattaattgaatcaacctaaaaaatcaaatttatttataatt 51469183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 377
Target Start/End: Complemental strand, 34466218 - 34466168
Alignment:
Q  327 gtaaatttaactttctaagttcattcagttactgatgcatgtggttcatat 377  Q
    |||||||| ||||| |||||||||||| ||| ||||| |||||||||||||    
T  34466218 gtaaatttgactttttaagttcattcaattaatgatgtatgtggttcatat 34466168  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Complemental strand, 29771778 - 29771733
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||| |||||||| |||||||||||||||| | |||||||||||||    
T  29771778 catacatcattaattgaatgaatctaaaaagtaaaatttgtttata 29771733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Complemental strand, 32473531 - 32473486
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||| |||||||| |||||||||||||||||| ||||||| |||||    
T  32473531 catacatcattaattgaatgaatctaaaaaataaaatttgcttata 32473486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 426
Target Start/End: Original strand, 35024423 - 35024472
Alignment:
Q  378 atcattaactgaatgaatctaaaaaattaaa-tttgtttataattgacaa 426  Q
    |||||||||||||||||  |||||||| ||| ||||||||||||||||||    
T  35024423 atcattaactgaatgaacttaaaaaatcaaaatttgtttataattgacaa 35024472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 421
Target Start/End: Complemental strand, 604909 - 604869
Alignment:
Q  381 attaactgaatgaatctaaaaaattaaatttgtttataatt 421  Q
    ||||| |||||||||||||||||| ||||||| ||||||||    
T  604909 attaattgaatgaatctaaaaaataaaatttgcttataatt 604869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 31596857 - 31596809
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttataatt 421  Q
    |||| |||||||| ||||||||| |||||||||||||||  ||||||||    
T  31596857 catacatcattaattgaatgaatataaaaaattaaatttacttataatt 31596809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Original strand, 10167 - 10212
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||| |||||||| ||||||||||||||||||||| |||| |||||    
T  10167 catacatcattaaatgaatgaatctaaaaaattaattttgcttata 10212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Original strand, 17904 - 17949
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttata 418  Q
    |||| |||||||| ||||||||||||||||||||| |||| |||||    
T  17904 catacatcattaaatgaatgaatctaaaaaattaattttgcttata 17949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 426
Target Start/End: Complemental strand, 54694 - 54641
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttataattgacaa 426  Q
    |||| |||||||| |||| |||  ||||||||||||||| ||||||||||||||    
T  54694 catacatcattaattgaacgaacataaaaaattaaatttatttataattgacaa 54641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 7066 - 7018
Alignment:
Q  373 catatatcattaactgaatgaatctaaaaaattaaatttgtttataatt 421  Q
    |||| |||||||| |||||||||||||||| | ||||||| ||||||||    
T  7066 cataaatcattaattgaatgaatctaaaaagtcaaatttgcttataatt 7018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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