View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20563_low_6 (Length: 425)
Name: NF20563_low_6
Description: NF20563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20563_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 36839564 - 36839145
Alignment:
| Q |
1 |
tctttaaaataaattcgataagtttgacagtactataaaccagatgcacgcaacatgatagcaaatcaaatgcaacatgacacaaataaatttgtattta |
100 |
Q |
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| T |
36839564 |
tctttaaaataaattcaataagtttgacagtactataaaccagatgcacgcaacatgatagcaaatcaaatgcaacatgacacaaataaatttgtattta |
36839465 |
T |
|
| Q |
101 |
cctcgacggccaaaccaggcataggcaactggacttgtaagcaggctgtgggaaaagacaagtagaagagggtagagactaagaccatgtttgaaggatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
36839464 |
cctcgacggccaaaccaggcataggcaactggacttgtaagcaggctgtgggaaaagacaagtagaagaaggtagagaccaagaccatgtttgaaggatg |
36839365 |
T |
|
| Q |
201 |
acatggttgaattagtgaatagaatgcaattatctgcaacnnnnnnntaagttattcaatagagtctaaaaagaaa------------ttactcaattat |
288 |
Q |
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| T |
36839364 |
acatggttgaattagtgaatagaatgcaattatctgcaacaaaaaaataagttattcaatagagtctaaaaagaaacaaggaattaagttactcaattat |
36839265 |
T |
|
| Q |
289 |
ctatttacacattgatcatgaagagttagtaataagagtgcactgcatgtgccctgacagtgtaacgcatgctttagatctcacattctccctctagatc |
388 |
Q |
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| T |
36839264 |
ctatttacacattgatcatgaagagttagcaataagagtgcactgcatgtgccctgacagtgtaacgcatgctttagatctcacattctccctctagatc |
36839165 |
T |
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| Q |
389 |
tcacatttcaacaaaaattt |
408 |
Q |
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| T |
36839164 |
tcacatttcaacaaaaattt |
36839145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 67 - 239
Target Start/End: Complemental strand, 36847076 - 36846898
Alignment:
| Q |
67 |
caaatgcaacatgacacaaataaatttgtatttacctcgacggc---caaaccaggcataggcaactggacttgtaagcaggctgtgggaaaagacaagt |
163 |
Q |
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|||||||||||||||| ||||| |||||||| |||||| |||| || ||||||||||||| | |||||||||||||||||||||||||| ||||||| |
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| T |
36847076 |
caaatgcaacatgacatgaataagtttgtatt-acctcgtcggcggccataccaggcataggccattggacttgtaagcaggctgtgggaaacgacaagt |
36846978 |
T |
|
| Q |
164 |
agaagagggtagagactaagac----catgtttgaaggatgacatggttgaattagtgaatagaatgcaattatctgcaa |
239 |
Q |
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| T |
36846977 |
agaagaaggtagagaccaagaccatgcatgtttgaaagaggacatggttaaattagtgaataaaatgcaattatctgcaa |
36846898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 128 - 207
Target Start/End: Complemental strand, 36835587 - 36835508
Alignment:
| Q |
128 |
actggacttgtaagcaggctgtgggaaaagacaagtagaagagggtagagactaagaccatgtttgaaggatgacatggt |
207 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||| ||||||||| ||||||||||||||| || |||||||| |
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| T |
36835587 |
actggacttgtaaggaggatgtgggaaaagacaagtagaagaaggtagagaccaagaccatgtttgaaagaggacatggt |
36835508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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