View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20563_low_8 (Length: 340)
Name: NF20563_low_8
Description: NF20563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20563_low_8 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 340
Target Start/End: Complemental strand, 10265910 - 10265586
Alignment:
| Q |
16 |
cagatacgacactgacacgttgataccaatgataatttgagaaaatgaaagtaattaaaacttgtcacaagtatcggtgcatcgtcgttgctggaaacca |
115 |
Q |
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| T |
10265910 |
cagatacgacactgacacgttgataccaatgataatttgagaaaatgaaagtaattaaaacttgtcacaagtatcggtgcatcgtcgttgctggaaacca |
10265811 |
T |
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| Q |
116 |
aacacatctttaatttgaagtgtctatgctatatgaatttatttttatgaattactatcacatacaccgaatatgacactgacacgtcgacccgataaaa |
215 |
Q |
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| T |
10265810 |
aacacatctttaatttgaagtgtctatgctatatgaatttatttttatgaaatactatcacatacaccgaatatgacactgacacgtcgacctgataaaa |
10265711 |
T |
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| Q |
216 |
atttgaaaaaattgaagtaattgaatttaatcataaatgtcagtgtcgtattgttgtcggacaccagtccatatgtgacaacagacatttcttcaatgtg |
315 |
Q |
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| T |
10265710 |
atttgaaaaaactgaagtaattgaatttaatcataaatgtcagtgtcgtattgttgtcggacaccaatacatatgtgacaatagacatttcttcaatgtg |
10265611 |
T |
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| Q |
316 |
tcggttcggttatacatagttttct |
340 |
Q |
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| T |
10265610 |
tcagttcggttctacatagttttct |
10265586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 28 - 322
Target Start/End: Complemental strand, 10273586 - 10273292
Alignment:
| Q |
28 |
tgacacgttgataccaatgataatttgagaaaatgaaagtaattaaaacttgtcacaagtatcggtgcatcgtcgttgctggaaaccaaacacatcttta |
127 |
Q |
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| T |
10273586 |
tgacacattgacatcaatgataatttgagaaaatgaa--tagttaaaactcgtcataagtatcagtgcaatgttgttgtaggaaaccaaatacatcttca |
10273489 |
T |
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| Q |
128 |
atttgaagtgtctatgctatatgaatttatttttatgaattactatcacatacaccgaatatgacactgacacgtcgacc-cgataaaaatttgaaaaaa |
226 |
Q |
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| T |
10273488 |
atcttaagtgtcaatgcaatatgaatttatttttatgaggcattatcacatacatcgaatatgacactgacacgtcaacctcgataataatttaaaaaag |
10273389 |
T |
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| Q |
227 |
ttgaagtaattgaattt--aatcataaatgtcagtgtcgtattgttgtcggacaccagtccatatgtgacaacagacatttcttcaatgtgtcggttc |
322 |
Q |
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| T |
10273388 |
ttgaagtaa-tgaatatcgaggttgacatatcagtgtcgtatcgttgtcggacaccaatacatatgggacatcagacatttcttcagtgtgtcggttc |
10273292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 11815813 - 11815854
Alignment:
| Q |
21 |
acgacactgacacgttgataccaatgataatttgagaaaatg |
62 |
Q |
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| T |
11815813 |
acgacactgacacgttgacaccaataataatttgagaaaatg |
11815854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 7251033 - 7250988
Alignment:
| Q |
26 |
actgacacgttgataccaatgataatttgagaaaatgaaagtaatt |
71 |
Q |
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| T |
7251033 |
actgacacgttgacaccaataataatttgagaaaatgaaagtaatt |
7250988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 52067083 - 52067123
Alignment:
| Q |
24 |
acactgacacgttgataccaatgataatttgagaaaatgaa |
64 |
Q |
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| T |
52067083 |
acactgacacgtcgataccaataataatttaagaaaatgaa |
52067123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 1555932 - 1555861
Alignment:
| Q |
207 |
ccgataaaaatttgaaaaaattgaagtaattgaatttaatcataaatgtcagtgtcgtattgttgtcggacacca |
281 |
Q |
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| T |
1555932 |
ccgataataatttgaaaaa---gaagtaattgaatataattacatatgtctgtctcgtattggtgtcggacacca |
1555861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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