View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20564_high_14 (Length: 292)

Name: NF20564_high_14
Description: NF20564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20564_high_14
NF20564_high_14
[»] chr3 (7 HSPs)
chr3 (1-219)||(3211354-3211572)
chr3 (95-219)||(3207954-3208076)
chr3 (217-291)||(3212029-3212103)
chr3 (90-219)||(3191037-3191164)
chr3 (1-44)||(3195555-3195598)
chr3 (217-291)||(14071927-14072005)
chr3 (217-291)||(17388276-17388354)
[»] chr1 (4 HSPs)
chr1 (217-291)||(17986380-17986458)
chr1 (217-291)||(52755556-52755629)
chr1 (217-291)||(19364474-19364552)
chr1 (246-291)||(28207735-28207780)
[»] scaffold0031 (1 HSPs)
scaffold0031 (217-291)||(77649-77727)
[»] chr7 (5 HSPs)
chr7 (217-291)||(17946535-17946613)
chr7 (217-291)||(9311331-9311409)
chr7 (217-290)||(9258845-9258922)
chr7 (217-291)||(3210941-3211019)
chr7 (246-291)||(8787482-8787527)
[»] chr5 (2 HSPs)
chr5 (217-291)||(17408925-17409003)
chr5 (217-291)||(21382084-21382162)
[»] chr4 (2 HSPs)
chr4 (217-291)||(7197020-7197098)
chr4 (247-291)||(16954112-16954156)
[»] chr6 (1 HSPs)
chr6 (217-278)||(20105861-20105926)
[»] chr2 (1 HSPs)
chr2 (217-291)||(23704072-23704150)
[»] scaffold0072 (1 HSPs)
scaffold0072 (217-290)||(60515-60591)
[»] scaffold0011 (1 HSPs)
scaffold0011 (219-290)||(162290-162364)
[»] chr8 (2 HSPs)
chr8 (246-291)||(1990695-1990740)
chr8 (217-291)||(22818036-22818114)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 3211354 - 3211572
Alignment:
Q  1 tccttattatactgtttgtagaaaagcatccactacaaccaatacaccacaaatgacaaaaacagaaaaagaaaggctctccatcaaccaaaaatggcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3211354 tccttattatactgtttgtagaaaagcatccactacaaccaatacaccacaaatgacaaaaacagaaaaagaaaggctctccatcaaccaaaaatggcac 3211453  T
Q  101 gtccagtgggaaaatacaacctttaccactgnnnnnnnttcatttttctacgtcatgattaggtttgatgtatgcacatgagctttggaaagactctcaa 200  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3211454 gtccagtgggaaaatacaacctttaccactgaaaaaaattcatttttctacgttatgattaggtttgatgtatgcacatgagctttggaaagactctcaa 3211553  T
Q  201 caatataaaccaactatca 219  Q
    |||||||||||||||||||    
T  3211554 caatataaaccaactatca 3211572  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 95 - 219
Target Start/End: Original strand, 3207954 - 3208076
Alignment:
Q  95 tggcacgtccagtgggaaaatacaacctttaccactgnnnnnnnttcatttttctacgtcatgattaggtttgatgtatgcacatgagctttggaaagac 194  Q
    |||||||  |||||||| |||||||||||||||| ||       |||||||| ||| ||||||||||||||||||||||||||||||||| ||||| ||     
T  3207954 tggcacgctcagtgggacaatacaacctttaccattgaaaag--ttcattttcctaggtcatgattaggtttgatgtatgcacatgagctatggaatgag 3208051  T
Q  195 tctcaacaatataaaccaactatca 219  Q
    ||||||||||||||| |||||||||    
T  3208052 tctcaacaatataaagcaactatca 3208076  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 3212029 - 3212103
Alignment:
Q  217 tcagagaggtagcacggcccgtgctcccacacggccgtgccaagtttcagggttctcttttgttgcctttgcttc 291  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||  ||||||||    
T  3212029 tcagagaggtagcacggcccgtgctcccacacggccgtgccaaacttcagggttctcttttgttgtttttgcttc 3212103  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 3191037 - 3191164
Alignment:
Q  90 aaaaatggcacgtccagtgggaaaatacaacctttaccactgnnnnnnnttcatttttctacgtcatgattaggtttgatgtatgcacatgagctttgga 189  Q
    |||| |||||||| |||||||| |||||||||||||||| ||       || ||||| |||  |||||||||||||||||||||||||||||||| ||||    
T  3191037 aaaattggcacgttcagtgggacaatacaacctttaccattgaaaaa--tttattttcctagatcatgattaggtttgatgtatgcacatgagctatgga 3191134  T
Q  190 aagactctcaacaatataaaccaactatca 219  Q
    | || ||||||||||||||| |||||||||    
T  3191135 atgagtctcaacaatataaagcaactatca 3191164  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 3195555 - 3195598
Alignment:
Q  1 tccttattatactgtttgtagaaaagcatccactacaaccaata 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3195555 tccttattatactgtttgtagaaaagcatccactacaaccaata 3195598  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 14072005 - 14071927
Alignment:
Q  217 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 291  Q
    |||||||||| |||||||| ||||||||||    |||||||||||||| ||||||||||||||||| ||| ||||||||    
T  14072005 tcagagaggtggcacggcctgtgctcccactagcacggccgtgccaagcttcagggttctcttttgctgcttttgcttc 14071927  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 17388276 - 17388354
Alignment:
Q  217 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 291  Q
    |||||||||| |||||||||| ||||||||    |||||||||||||| ||||| |||||||||| |||| ||||||||    
T  17388276 tcagagaggtggcacggcccgcgctcccactggcacggccgtgccaagcttcagagttctcttttattgcttttgcttc 17388354  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 17986380 - 17986458
Alignment:
Q  217 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 291  Q
    |||||||||| |||||||||||||||||||    |||||||||||||| ||||||||||||||||||||| ||||||||    
T  17986380 tcagagaggtggcacggcccgtgctcccactggcacggccgtgccaagcttcagggttctcttttgttgcttttgcttc 17986458  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 52755629 - 52755556
Alignment:
Q  217 tcagagaggtagcacggcccgtgctcccacacggccgtgccaagtttcagggttctcttttgttgcctttgcttc 291  Q
    |||||||||| |||||||||||||||||||  |||||||||||| ||||||||||||||||| ||| ||||||||    
T  52755629 tcagagaggtggcacggcccgtgctcccact-ggccgtgccaagcttcagggttctcttttgctgcttttgcttc 52755556  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 19364474 - 19364552
Alignment:
Q  217 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 291  Q
    |||||||||| ||| |||||||||||||||    |||| | ||||||| ||||||||||||||||| ||| ||||||||    
T  19364474 tcagagaggtggcagggcccgtgctcccaccggcacggtcatgccaaggttcagggttctcttttgctgcttttgcttc 19364552  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 28207735 - 28207780
Alignment:
Q  246 cacggccgtgccaagtttcagggttctcttttgttgcctttgcttc 291  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||||    
T  28207735 cacggccgtgccaagcttcagggttctcttttgctgcatttgcttc 28207780  T

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Target: scaffold0031 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 77649 - 77727
Alignment:
Q  217 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 291  Q
    |||||||||| |||||||||||||||||||    |||||||||||||| ||||||||||||||||| ||| ||||||||    
T  77649 tcagagaggtggcacggcccgtgctcccactggcacggccgtgccaagcttcagggttctcttttgctgcttttgcttc 77727  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 17946535 - 17946613
Alignment:
Q  217 tcagagaggtagcacggcccgtgctccca----cacggccgtgccaagtttcagggttctcttttgttgcctttgcttc 291  Q
    |||||||||| |||| |||||||||||||    ||||||||||||||| ||||||||||||||||| ||| ||||||||    
T  17946535 tcagagaggtggcacagcccgtgctcccagtggcacggccgtgccaagcttcagggttctcttttgctgcttttgcttc 17946613  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 9311331 - 9311409
Alignment:
Q  217 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 291  Q
    ||||| |||| |||||||||||||||||||    ||||| |||||||| ||||||||||||||||| ||| ||||||||    
T  9311331 tcagacaggtggcacggcccgtgctcccactggcacggctgtgccaagcttcagggttctcttttgctgcttttgcttc 9311409  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 9258922 - 9258845
Alignment:
Q  217 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgctt 290  Q
    ||||| |||| |||||||||||||||||||    ||||| |||||||| ||||||||||||||||| ||| |||||||    
T  9258922 tcagacaggtggcacggcccgtgctcccactggcacggctgtgccaagcttcagggttctcttttgctgcttttgctt 9258845  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 3211019 - 3210941
Alignment:
Q  217 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 291  Q
    |||||||| | || ||||||||||||||||    |||||||||||||| | ||| ||||||||||| ||| ||||||||    
T  3211019 tcagagagatggcccggcccgtgctcccactggtacggccgtgccaagctacagagttctcttttgctgcttttgcttc 3210941  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 8787527 - 8787482
Alignment:
Q  246 cacggccgtgccaagtttcagggttctcttttgttgcctttgcttc 291  Q
    ||||||||||||||| |||||||| |||||||| ||| ||||||||    
T  8787527 cacggccgtgccaagcttcagggtgctcttttgctgcttttgcttc 8787482  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 17409003 - 17408925
Alignment:
Q  217 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 291  Q
    |||||||||| |||||||||||||||||||    |||| ||||||||| ||||||||||||||||| ||| ||||||||    
T  17409003 tcagagaggtggcacggcccgtgctcccactagcacggtcgtgccaagcttcagggttctcttttgctgcttttgcttc 17408925  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 21382084 - 21382162
Alignment:
Q  217 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 291  Q
    |||||||| | ||||| |||||||||||||    |||||||||||||||||  ||||||||||||||||| ||||||||    
T  21382084 tcagagagatggcacgacccgtgctcccactggcacggccgtgccaagtttatgggttctcttttgttgcttttgcttc 21382162  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 7197020 - 7197098
Alignment:
Q  217 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 291  Q
    |||||||||| |||||||||||||||||||    |||||| ||||||| ||||||||||||||||| ||| ||||||||    
T  7197020 tcagagaggtggcacggcccgtgctcccactggcacggccatgccaagcttcagggttctcttttgctgcttttgcttc 7197098  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 16954156 - 16954112
Alignment:
Q  247 acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 291  Q
    |||||||||||||| |||||||| |||||||| ||| ||||||||    
T  16954156 acggccgtgccaagcttcagggtgctcttttgctgcttttgcttc 16954112  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 20105926 - 20105861
Alignment:
Q  217 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttg 278  Q
    |||||||||| |||||||||||||||||||    |||||||||||||| |||||||||||||||||    
T  20105926 tcagagaggtggcacggcccgtgctcccactagcacggccgtgccaagcttcagggttctcttttg 20105861  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 23704072 - 23704150
Alignment:
Q  217 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 291  Q
    ||||||| || |||||||||||||||||||    |||||||||||||| ||||||||||||||||| | | ||||||||    
T  23704072 tcagagaagtggcacggcccgtgctcccactggcacggccgtgccaagcttcagggttctcttttgctacttttgcttc 23704150  T

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Target: scaffold0072 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 60515 - 60591
Alignment:
Q  217 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgctt 290  Q
    |||||||||| |||||||| ||||||||||    |||||||||||||| ||||| | ||||||||||||| |||||||    
T  60515 tcagagaggtggcacggcctgtgctcccactggcacggccgtgccaagcttcagag-tctcttttgttgcttttgctt 60591  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 290
Target Start/End: Original strand, 162290 - 162364
Alignment:
Q  219 agagaggtagcacggcccgtgctccca----cacggccgtgccaagtttcagggttctcttttgttgcctttgctt 290  Q
    |||||||| ||||||||||||||||||    || |||||||||||| ||||| | ||||||||||||| |||||||    
T  162290 agagaggtggcacggcccgtgctcccactggcatggccgtgccaagcttcagag-tctcttttgttgcttttgctt 162364  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 1990740 - 1990695
Alignment:
Q  246 cacggccgtgccaagtttcagggttctcttttgttgcctttgcttc 291  Q
    |||||| |||||||| ||||||||||||||||| ||| ||||||||    
T  1990740 cacggctgtgccaagcttcagggttctcttttgctgcttttgcttc 1990695  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 22818036 - 22818114
Alignment:
Q  217 tcagagaggtagcacggcccgtgctcccac----acggccgtgccaagtttcagggttctcttttgttgcctttgcttc 291  Q
    |||||||||| ||||||||| |||||||||    ||| |||||||||| ||||||||||| ||||  ||| ||||||||    
T  22818036 tcagagaggtggcacggcccatgctcccactagcacgaccgtgccaagcttcagggttctttttttctgcttttgcttc 22818114  T

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