View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20564_high_20 (Length: 242)
Name: NF20564_high_20
Description: NF20564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20564_high_20 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 22622567 - 22622326
Alignment:
| Q |
1 |
aaaggtattgacatgcaattgactgaattcaaaagctctaggatttaagtatccattgtcacagcggatgttaaatccattagcttgcttgggtcttgca |
100 |
Q |
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| T |
22622567 |
aaaggtattgacatgcaattgactgaattcaaaagctctaggatttaagtatccattgtcacagcggatgttaaatccattagcttgcttgggtcttgca |
22622468 |
T |
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| Q |
101 |
tcatgactgaatgcatttggacagtgaagttgctgaggagtacattggaggaactaggttaaatatttgtgagagatatttatgaagcagtctaagttgg |
200 |
Q |
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| T |
22622467 |
tcatgaccgaatgcatttggacagtgaagttgctgaggagtacattggaggaactaggttaaatatttgtgagagatatttatgaagcagtctaagttag |
22622368 |
T |
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| Q |
201 |
atgattgttgagctgagtttgctctatgtctgtgcctttgct |
242 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22622367 |
atgattgttgagctgagtttgctctatgtctgttcctttgct |
22622326 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 15146906 - 15146968
Alignment:
| Q |
1 |
aaaggtattgacatgcaattgactgaattcaaaagctctaggatttaagtatccattgtcaca |
63 |
Q |
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|||||||||| |||| ||||||||||||| |||| || || ||| ||||||||||||||||| |
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| T |
15146906 |
aaaggtattggcatggaattgactgaattaaaaaactgtacaattcaagtatccattgtcaca |
15146968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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