View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20564_high_23 (Length: 220)
Name: NF20564_high_23
Description: NF20564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20564_high_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 23563816 - 23564038
Alignment:
| Q |
1 |
cttgcaagtggcaacaactcacgactgcatatagcatatatatacgtgtaagaatagaaggcatatattaaccaggtccatcatttgtagttcgtgcatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23563816 |
cttgcaagtggcaacaactcacgactgcatatagcatatatatacgtgtaagaatagaaggcatatattaaccaggtccatcatttgtagttcgtgcatg |
23563915 |
T |
|
| Q |
101 |
tgttgtacttgaggaccataaatacgaatgttattctgcatgaagttgatttaaaaggcatagtattccattttgttaaggataagaaa--------aac |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23563916 |
tgttgtacttgaggaccataaatacgaatgttattctgcatgaagttgatttaaaaggcatagtattccattttgttaaggataagaaagtaatggtaac |
23564015 |
T |
|
| Q |
193 |
actgataataaaataaaggagaa |
215 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
23564016 |
attgataataaaataaaggagaa |
23564038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 61 - 185
Target Start/End: Original strand, 23570505 - 23570631
Alignment:
| Q |
61 |
gcatatattaaccaggtccatcatttgtagttcgtgcatgtgttgtacttgaggaccataaatacgaatgttattct--gcatgaagttgatttaaaagg |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||| ||||||||||||||||||||| |
|
|
| T |
23570505 |
gcatatattaaccaggtccatcatttgtagttcgtgcatgtgctgtacttgaggaccatatatgtgaatgctattctgcgcatgaagttgatttaaaagg |
23570604 |
T |
|
| Q |
159 |
catagtattccattttgttaaggataa |
185 |
Q |
| |
|
||||||||||| ||||||||||||||| |
|
|
| T |
23570605 |
catagtattcctttttgttaaggataa |
23570631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 23597088 - 23597194
Alignment:
| Q |
80 |
atcatttgtagttcgtgcatgtgttgtacttgaggaccataaatacgaatgttattctgcatgaagttgatttaaaaggcatagtattccattttgttaa |
179 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||| || ||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
23597088 |
atcatttgttgttcgtgcatgtgctgtacttgaggaccgtatatacgaatgctattctgcatgaagtagatttaaaaggcatagtattcctttttgttaa |
23597187 |
T |
|
| Q |
180 |
ggataag |
186 |
Q |
| |
|
||||||| |
|
|
| T |
23597188 |
ggataag |
23597194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 23587067 - 23587175
Alignment:
| Q |
80 |
atcatttgtagttcgtgcatgtgttgtacttgaggaccataaata--cgaatgttattctgcatgaagttgatttaaaaggcatagtattccattttgtt |
177 |
Q |
| |
|
||||||||| ||||||||||| || |||||||||||||| ||| | |||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23587067 |
atcatttgttattcgtgcatgttctgaacttgaggaccatatatatacaaatgctattctttatgaagttgatttaaaaggcatagtattccattttgtt |
23587166 |
T |
|
| Q |
178 |
aaggataag |
186 |
Q |
| |
|
||||||||| |
|
|
| T |
23587167 |
aaggataag |
23587175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 23597040 - 23597079
Alignment:
| Q |
1 |
cttgcaagtggcaacaactcacgactgcatatagcatata |
40 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23597040 |
cttgcaagtggcaacaactcacgactgcatatagcatata |
23597079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University