View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20564_high_7 (Length: 391)
Name: NF20564_high_7
Description: NF20564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20564_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 49 - 216
Target Start/End: Original strand, 22694884 - 22695051
Alignment:
| Q |
49 |
aagtaacttttacaataatattaatactatcatttagtctccatcgccaaatattcttgtagtagctgagtatgttcctaagataccacttatcactccc |
148 |
Q |
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| T |
22694884 |
aagtgacttttacaataatattaatactatcatttagtctccatcgccaaatattcttgtagtagctgagtatgttcctaagataccacttatcacccca |
22694983 |
T |
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| Q |
149 |
acaataataatcaaagtgcaacttgttatctgaaaataaaataattaacatgaaatataattagtctc |
216 |
Q |
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| T |
22694984 |
acaataataatcaaaatgcaacttgttatctgaaaataaaataattaacatgaaatataattagtctc |
22695051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 266 - 373
Target Start/End: Original strand, 22695249 - 22695356
Alignment:
| Q |
266 |
attattttataaagattgaaaatatatttaaccctaatataaaacaaagaatgatttcaaataagaggttattgaaatacctgcatatttgataatttgc |
365 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22695249 |
attattttataaggattgaaaatatatttaaccctaatataaaacaaagaatgatttcaaataagaggttattgaaatacctgcatatttgataatttgc |
22695348 |
T |
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| Q |
366 |
cactttgt |
373 |
Q |
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|||||||| |
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| T |
22695349 |
cactttgt |
22695356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 74 - 184
Target Start/End: Original strand, 22683337 - 22683447
Alignment:
| Q |
74 |
actatcatttagtctccatcgccaaatattcttgtagtagctgagtatgttcctaagataccacttatcactcccacaataataatcaaagtgcaacttg |
173 |
Q |
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| T |
22683337 |
actatcatttaatctccatcgccaaatattcttgaagtagctgagtatgttcctatgataccacttatcacccccacaataataatcaaaatgcaatttg |
22683436 |
T |
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| Q |
174 |
ttatctgaaaa |
184 |
Q |
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||||||||||| |
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| T |
22683437 |
ttatctgaaaa |
22683447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 369
Target Start/End: Original strand, 22683871 - 22683944
Alignment:
| Q |
294 |
taaccctaatataaaacaaagaatgatttcaaataagaggttattgaaatacctgcatatttgataatttgccact |
369 |
Q |
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|||||||||||||||||| ||| ||| ||| ||||| | ||||||||||||||||| |||||||| ||||||| |
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| T |
22683871 |
taaccctaatataaaaca--gaagtattataaagaagagctgattgaaatacctgcatagttgataatctgccact |
22683944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 272 - 367
Target Start/End: Original strand, 36252177 - 36252272
Alignment:
| Q |
272 |
ttataaagattgaaaatatatttaaccctaatataaaacaaagaatgatttcaaataagaggttattgaaatacctgcatatttgataatttgcca |
367 |
Q |
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| T |
36252177 |
ttataaggattaaaaatatatctaactctaatataaaacaaagaatgattgtaaagaagagattattgaaatacctgcatagttgataatctgcca |
36252272 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 294 - 361
Target Start/End: Original strand, 31891052 - 31891119
Alignment:
| Q |
294 |
taaccctaatataaaacaaagaatgatttcaaataagaggttattgaaatacctgcatatttgataat |
361 |
Q |
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||||| |||||||||||||||||||||| |||| |||| ||||||||||||||||||| |||||||| |
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| T |
31891052 |
taaccttaatataaaacaaagaatgattgcaaagaagatattattgaaatacctgcatagttgataat |
31891119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 31559781 - 31559724
Alignment:
| Q |
286 |
aatatatttaaccctaatataaaacaaagaatgatttcaaataagaggttattgaaat |
343 |
Q |
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||||||| ||||| |||||||||||||||||||||| |||| ||||| |||||||||| |
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| T |
31559781 |
aatatatctaaccataatataaaacaaagaatgattgcaaagaagagattattgaaat |
31559724 |
T |
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