View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20564_high_9 (Length: 347)
Name: NF20564_high_9
Description: NF20564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20564_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 331
Target Start/End: Original strand, 38089848 - 38090173
Alignment:
| Q |
9 |
attatactgaccatggcaggccaactgtaagttaattccatg----tcttaaatgaaaactaaaatgctaacatatagttatggcaaataatttacacaa |
104 |
Q |
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| T |
38089848 |
attataatgaccatggcaggccaactgtaagttaattccatgcatgtcttaaatgaaaactaaaatgctaacatatagttatggcaaatg---tacacaa |
38089944 |
T |
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| Q |
105 |
acac--actcctgagttttggaattaaagtgtataaatttaatataacatgtttatgtgcaggctcttcaatttcttggttgtgataatctaaaacttgg |
202 |
Q |
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| T |
38089945 |
acacacactcctgagttttggaattaaagtgtataaatttaatataacatgtttatctgcaggctcttcaatttcttggatgtgataatctaaaacttgg |
38090044 |
T |
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| Q |
203 |
tccattgagacacattgacagcccgaaaaatcatataagcatagttgattgcaacggcgctttaatctcccatcttcatataattgcaccggagaatagt |
302 |
Q |
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| T |
38090045 |
tccattgagacacattgacagcccaaaaaatcatataagcatagtcgattgcaatggcgctttaatctcccatcttcatataattgcaccggagaatagt |
38090144 |
T |
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| Q |
303 |
cccaacaccgatggaattgatatttcaag |
331 |
Q |
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| T |
38090145 |
cccaacaccgatggaattgatatttcaag |
38090173 |
T |
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Back To:
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Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 145 - 330
Target Start/End: Original strand, 32730103 - 32730288
Alignment:
| Q |
145 |
tataacatgtttatgtgcaggctcttcaatttcttggttgtgataatctaaaacttggtccattgagacacattgacagcccgaaaaatcatataagcat |
244 |
Q |
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| T |
32730103 |
tataacatatatatatgcaggctcttaaaattcttgaatgtgataatctaaaacttggcccattgaaacacatcaacagccccagaaatcatataagtat |
32730202 |
T |
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| Q |
245 |
agttgattgcaacggcgctttaatctcccatcttcatataattgcaccggagaatagtcccaacaccgatggaattgatatttcaa |
330 |
Q |
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| T |
32730203 |
agtcggatgcaatgacgctttaatctctaatcttcatataattgctccaaaggatagtcccaacaccgatgggattgacatttcaa |
32730288 |
T |
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