View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20564_low_1 (Length: 993)
Name: NF20564_low_1
Description: NF20564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20564_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 490; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 19 - 615
Target Start/End: Original strand, 38025158 - 38025749
Alignment:
| Q |
19 |
actgtcatgtacttgagctgctggggtcctaattgattaatttgtaaatataattattatattatatagtgatgttagattagataaactatgtaaagtt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38025158 |
actgtcatgtacttgagctgctggggtcctaattgattaatttgtaaatataattattatattacatagtgatgttagattagataaactatgtaaagtt |
38025257 |
T |
|
| Q |
119 |
tgtaatatcaaacggcaatattattcaatgaggaaagtttattcttcacatctttgtttctcagtgcatacccgatcagtattattannnnnnnnnnn-g |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || | |
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| T |
38025258 |
tgtaatatcaaacggcaatattattcaatgaggaaagtttattcttcatatctttgtttctcagtgcatacccgatcagtattttttttatttttttttg |
38025357 |
T |
|
| Q |
218 |
gtagtgagtgtgttatgatgatcagatggtagtactttaaattttctatcaacaaaaacttaccacatcttgattaatttgttcgtgataaatattcttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38025358 |
gtagtgagtgtgttatgatgatcagatggtagtactttaaatttgctatcaacaaaaacttaccacatcttgattaatttgttcgtgataaatatttttg |
38025457 |
T |
|
| Q |
318 |
agctgagtgtttaaaagttaaaacagaactattgaaattgaagtagatgattgtgtattaggaccgaatagatggagtagtgtaaatttgttatcaataa |
417 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38025458 |
agctgagtgtttaaaagttaaaacagaactattg------aagtagatgattgtgtattaagaccgaatagatggagtagtgtaaatttgttatcaataa |
38025551 |
T |
|
| Q |
418 |
aagtatactagactataccataatttgtgtgataaattttgtgatgtgaatttacattccaaattttcttccaattttgaatttgattgaaacatacaaa |
517 |
Q |
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| T |
38025552 |
aagtatactagactataccataatttgtgtgataaattttgtgatgtgaatttacattccaaattttcttccaattttgaatttgattgagacatacaaa |
38025651 |
T |
|
| Q |
518 |
agaaagatgcttaattgttgtgggataggttctagcatcaacttatcacatagatttgtatttggtgcaatgaagccagatgatataattgttgatca |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38025652 |
agaaagatgcttaattgttgtgggataggttctagcatcaacttatcacacaaatttgtatttggtgcaatgaagccagatgatataattgtagatca |
38025749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 478 - 895
Target Start/End: Original strand, 38032371 - 38032789
Alignment:
| Q |
478 |
aaattttcttccaattttgaatttgattgaaacat---acaaaagaaagatgcttaattgttgtgggataggttctagcatcaacttatcacatagattt |
574 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||| |
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| T |
38032371 |
aaattttcttccaattttgaatttgattgagacatttaacaaaagaaagatgcttaattattgtgggataagttctagcatcaacttatcgcatag---- |
38032466 |
T |
|
| Q |
575 |
gtatttggtgcaatgaagccagatgatataattgttgatcattggaccctcttacacaaatagatctggggatacattggttactggataaggggagaaa |
674 |
Q |
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| T |
38032467 |
-tatttggtgcaatgaagccagatgatataattgttgatcaatggaccctcttacacaaatagatctggggatacattggttactggataaggggagaaa |
38032565 |
T |
|
| Q |
675 |
caagaactattattcaagtaacagaggccaaagcaaaaacaatttctaaaattggtataaagttgttgagtcctacatcagtgttgagaatgggc----a |
770 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| | |
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| T |
38032566 |
caagaactattattcaagtaacagaggccaaagcaaaagcaatttctaaaattggtataaag-tgttgagtcctacatcagtgttgaaaatgggcatata |
38032664 |
T |
|
| Q |
771 |
tattcacaggatcgtttgtttattttttaaaaaggtgaatgagaggacaaagataaagaaaataagaatgaagaaaatttagatgaaaaccgtgttggtt |
870 |
Q |
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|||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38032665 |
tattcacaagatcgtttgtttgttttttaaaaaggggaatgagaggacaaagataaagaaaataagaatgaagaaaatttagatgaagaccgtgttggtg |
38032764 |
T |
|
| Q |
871 |
tgacgtataataacttgcttcttgt |
895 |
Q |
| |
|
|||| || ||||||||||||||||| |
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| T |
38032765 |
tgacataaaataacttgcttcttgt |
38032789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 751 - 975
Target Start/End: Original strand, 38025746 - 38025970
Alignment:
| Q |
751 |
atcagtgttgagaatgggcatattcacaggatcgtttgtttattttttaaaaaggtgaatgagaggacaaagataaagaaaataagaatgaagaaaattt |
850 |
Q |
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||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38025746 |
atcagtgctgaaaatgggcatattcacaagatcgtttgtttattttttaaaaaggtgaatgagaggacaaagataaagaaaataagaatgaagaaaattt |
38025845 |
T |
|
| Q |
851 |
agatgaaaaccgtgttggtttgacgtataataacttgcttcttgtcgacgagcaaaatcttgttaatattgttgatagtacatttaattggatgatcaat |
950 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38025846 |
agatgaagaccgtgttggtttgacgtataataacttgcttcttgttgacgagcaaaatcttgttaatattgttgatagtacatttaattggatgatcaat |
38025945 |
T |
|
| Q |
951 |
gttgatacttcagcatgccattctt |
975 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
38025946 |
gttgatacttcagcatgccattctt |
38025970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 84 - 201
Target Start/End: Original strand, 38031945 - 38032064
Alignment:
| Q |
84 |
atagtgatgttagattagataaactatgtaaagtttgtaatatcaaacggcaatattattcaatgaggaaagtttattcttcac--atctttgtttctca |
181 |
Q |
| |
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||||||||||||||||| || || |||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
38031945 |
atagtgatgttagattatattaattatgtaaattttgtaatcttaaacggcaatattattcaatgaggaaagtttattcttcacatatctatgtttctca |
38032044 |
T |
|
| Q |
182 |
gtgcatacccgatcagtatt |
201 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
38032045 |
gtgcatacccgatcagtatt |
38032064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 389 - 478
Target Start/End: Original strand, 38032176 - 38032270
Alignment:
| Q |
389 |
atggagtagtgtaaatttgttatcaataaaagtatac-----tagactataccataatttgtgtgataaattttgtgatgtgaatttacattcca |
478 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38032176 |
atggagtagtgtaaatttgctatcaataaaagtatacattactagactataccataatttgtgtgataaattttgtgatgtgaatttactttcca |
38032270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 84 - 201
Target Start/End: Original strand, 38003694 - 38003819
Alignment:
| Q |
84 |
atagtgatgttagattagataaactatgtaaagtttgtaatatcaaacggcaata------ttattcaatgaggaaagtttattcttcac--atctttgt |
175 |
Q |
| |
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|||||||| ||||||||||| | |||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| |||| ||| |
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| T |
38003694 |
atagtgatattagattagattatttatgtaaagtttgtaatatcaaactacagtactattattattcaatgaggaaagtttattcttcacatatctatgt |
38003793 |
T |
|
| Q |
176 |
ttctcagtgcatacccgatcagtatt |
201 |
Q |
| |
|
||| ||||||||||||||||||||| |
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|
| T |
38003794 |
ttcaaagtgcatacccgatcagtatt |
38003819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 38031898 - 38031937
Alignment:
| Q |
19 |
actgtcatgtacttgagctgctggggtcctaattgattaa |
58 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38031898 |
actgtcatgtacttgagctgctggggtcctaattgattaa |
38031937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 38003647 - 38003692
Alignment:
| Q |
19 |
actgtcatgtacttgagctgctggggtcctaattgattaatttgta |
64 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||| |
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|
| T |
38003647 |
actgtcatgtacttgagctgttggggtcccaattgattaatttgta |
38003692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 2912489 - 2912525
Alignment:
| Q |
19 |
actgtcatgtacttgagctgctggggtcctaattgat |
55 |
Q |
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||||||||||||||||||||||||||||| ||||||| |
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| T |
2912489 |
actgtcatgtacttgagctgctggggtccaaattgat |
2912525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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