View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20564_low_10 (Length: 333)

Name: NF20564_low_10
Description: NF20564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20564_low_10
NF20564_low_10
[»] chr7 (6 HSPs)
chr7 (141-333)||(47616590-47616782)
chr7 (1-39)||(47616436-47616474)
chr7 (37-73)||(47616486-47616522)
chr7 (233-271)||(27517311-27517349)
chr7 (257-294)||(5006585-5006622)
chr7 (257-294)||(9527166-9527203)
[»] chr8 (2 HSPs)
chr8 (236-294)||(20672729-20672787)
chr8 (257-294)||(31915345-31915382)
[»] chr1 (4 HSPs)
chr1 (233-287)||(42550205-42550259)
chr1 (234-294)||(50319249-50319309)
chr1 (257-294)||(15360851-15360888)
chr1 (257-294)||(39777620-39777657)
[»] chr4 (4 HSPs)
chr4 (234-279)||(4191712-4191757)
chr4 (257-294)||(10192241-10192278)
chr4 (257-294)||(30338668-30338705)
chr4 (255-287)||(7342154-7342186)
[»] chr5 (5 HSPs)
chr5 (237-294)||(11457078-11457135)
chr5 (234-295)||(12242741-12242802)
chr5 (257-294)||(14295463-14295500)
chr5 (257-294)||(28586842-28586879)
chr5 (262-294)||(10280657-10280689)
[»] chr3 (3 HSPs)
chr3 (256-293)||(40122827-40122864)
chr3 (237-294)||(44284114-44284171)
chr3 (257-294)||(49586992-49587029)
[»] chr2 (1 HSPs)
chr2 (254-294)||(32098381-32098421)


Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 141 - 333
Target Start/End: Original strand, 47616590 - 47616782
Alignment:
Q  141 tactttttcctaataacattgcacaagatgagatagtgtctgtttggattcgctaatttgagattttctaatgacattaacacttgttatcagtccataa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47616590 tactttttcctaataacattgcacaagatgagatagtgtctgtttggattcgctaatttgagattttctaatgacattaacacttgttatcagtccataa 47616689  T
Q  241 gctctcaaggatgacttatgaaaacagtttgactttattctatctttggttatactatacatacgcacttatacgataagtagttatactata 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47616690 gctctcaaggatgacttatgaaaacagtttgactttattctatctttggttatactatacatccgcacttatacgataagtagttatactata 47616782  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 47616474 - 47616436
Alignment:
Q  1 cctgatttagaaagtgattcgggaacacctttggtttgg 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  47616474 cctgatttagaaagtgattcgggaacacctttggtttgg 47616436  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 47616486 - 47616522
Alignment:
Q  37 tggacagcaaatgctcaagtaaatccgtatctcctgg 73  Q
    |||||||||||||||||||||||||||||||||||||    
T  47616486 tggacagcaaatgctcaagtaaatccgtatctcctgg 47616522  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 271
Target Start/End: Original strand, 27517311 - 27517349
Alignment:
Q  233 gtccataagctctcaaggatgacttatgaaaacagtttg 271  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  27517311 gtccataagctctccaggataacttatgaaaacagtttg 27517349  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 5006585 - 5006622
Alignment:
Q  257 tatgaaaacagtttgactttattctatctttggttata 294  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  5006585 tatgaaaacagtttgactttattttatcttttgttata 5006622  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 9527166 - 9527203
Alignment:
Q  257 tatgaaaacagtttgactttattctatctttggttata 294  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  9527166 tatgaaaacagtttgactttattatatcttttgttata 9527203  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 20672787 - 20672729
Alignment:
Q  236 cataagctctcaaggatgacttatgaaaacagtttgactttattctatctttggttata 294  Q
    ||||||||||| |||||  ||||| ||||||||||||||||||| ||||||| ||||||    
T  20672787 cataagctctccaggatagcttataaaaacagtttgactttattttatcttttgttata 20672729  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 31915345 - 31915382
Alignment:
Q  257 tatgaaaacagtttgactttattctatctttggttata 294  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  31915345 tatgaaaacaatttgactttattctatcttttgttata 31915382  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 42550259 - 42550205
Alignment:
Q  233 gtccataagctctcaaggatgacttatgaaaacagtttgactttattctatcttt 287  Q
    |||||||||||||  ||||||||||||| ||| |||||||||||||| |||||||    
T  42550259 gtccataagctcttcaggatgacttatggaaaaagtttgactttattttatcttt 42550205  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 294
Target Start/End: Complemental strand, 50319309 - 50319249
Alignment:
Q  234 tccataagctctcaaggatgacttatgaaaacagtttgactttattctatctttggttata 294  Q
    ||||||||||||| |||||  ||||||||||||  ||||||||||| ||||||| ||||||    
T  50319309 tccataagctctctaggatagcttatgaaaacaacttgactttattttatcttttgttata 50319249  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 15360888 - 15360851
Alignment:
Q  257 tatgaaaacagtttgactttattctatctttggttata 294  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  15360888 tatgaaaacagtttgactttattttatcttttgttata 15360851  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 39777657 - 39777620
Alignment:
Q  257 tatgaaaacagtttgactttattctatctttggttata 294  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  39777657 tatgaaagcagtttgactttattctatcttttgttata 39777620  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 4191757 - 4191712
Alignment:
Q  234 tccataagctctcaaggatgacttatgaaaacagtttgactttatt 279  Q
    |||||| |||||| ||||| ||||||||||||||||||||||||||    
T  4191757 tccatacgctctccaggataacttatgaaaacagtttgactttatt 4191712  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 10192278 - 10192241
Alignment:
Q  257 tatgaaaacagtttgactttattctatctttggttata 294  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  10192278 tatgaaaacaatttgactttattctatcttttgttata 10192241  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 30338668 - 30338705
Alignment:
Q  257 tatgaaaacagtttgactttattctatctttggttata 294  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  30338668 tatgaaaacagtttaactttattctatcttttgttata 30338705  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 7342186 - 7342154
Alignment:
Q  255 cttatgaaaacagtttgactttattctatcttt 287  Q
    ||||||||||||||||||||||||| |||||||    
T  7342186 cttatgaaaacagtttgactttattttatcttt 7342154  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 11457135 - 11457078
Alignment:
Q  237 ataagctctcaaggatgacttatgaaaacagtttgactttattctatctttggttata 294  Q
    |||||||||| | ||| |||| |||||||| |||||||||||| ||||||| ||||||    
T  11457135 ataagctctccaagataacttttgaaaacaatttgactttattatatctttcgttata 11457078  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 12242741 - 12242802
Alignment:
Q  234 tccataagctctcaaggatgacttatgaaaacagtttgactttattctatctttggttatac 295  Q
    ||||||||||||| | |||  |||||||||||| ||||||| |||| ||||||| |||||||    
T  12242741 tccataagctctccaagatagcttatgaaaacaatttgactctattttatcttttgttatac 12242802  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 14295500 - 14295463
Alignment:
Q  257 tatgaaaacagtttgactttattctatctttggttata 294  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  14295500 tatgaaaacagtttgactttattttatcttttgttata 14295463  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 28586842 - 28586879
Alignment:
Q  257 tatgaaaacagtttgactttattctatctttggttata 294  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  28586842 tatgaaaacagtttgactttattttatcttttgttata 28586879  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 10280657 - 10280689
Alignment:
Q  262 aaacagtttgactttattctatctttggttata 294  Q
    |||||||||||||||||||||||||| ||||||    
T  10280657 aaacagtttgactttattctatcttttgttata 10280689  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 40122827 - 40122864
Alignment:
Q  256 ttatgaaaacagtttgactttattctatctttggttat 293  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  40122827 ttatgaaaacagtttgactttattttatcttttgttat 40122864  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 44284114 - 44284171
Alignment:
Q  237 ataagctctcaaggatgacttatgaaaacagtttgactttattctatctttggttata 294  Q
    |||||||||| |||||  |||||||||||||||||||||| || ||| ||| ||||||    
T  44284114 ataagctctccaggatagcttatgaaaacagtttgactttgttttattttttgttata 44284171  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 49586992 - 49587029
Alignment:
Q  257 tatgaaaacagtttgactttattctatctttggttata 294  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  49586992 tatgaaaacagtttgactttattttatcttttgttata 49587029  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 32098381 - 32098421
Alignment:
Q  254 acttatgaaaacagtttgactttattctatctttggttata 294  Q
    ||||||||||||| |||||||||||| ||||||| ||||||    
T  32098381 acttatgaaaacactttgactttattttatcttttgttata 32098421  T

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