View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20564_low_11 (Length: 316)
Name: NF20564_low_11
Description: NF20564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20564_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 7 - 296
Target Start/End: Original strand, 47624912 - 47625201
Alignment:
| Q |
7 |
cagagagcacatgtataaaccattgcatgaaactttatagtacagttatgaaatgtcatggtcatgacatagtttgttttgttttccacattgcaatacc |
106 |
Q |
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| T |
47624912 |
cagagagcacatgtataaaccattgcatgaaactttatagtacagttatgaaatgtcatggtcatgacatagtttgttttgttttccacattgcaatacc |
47625011 |
T |
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| Q |
107 |
ccaaaaaacgatatttagatcattgtctaccacagcaaaacttgcaggcagcagagttaacttgaataatttgcacagacatataaacactaaacaacaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47625012 |
ccaaaaaacgatatttagatcattgtctaccacagcaaaacttgcaggcagcagagttaacttgaataatttgcacagacatataaacactaaacaacaa |
47625111 |
T |
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| Q |
207 |
taatctagcagcttaaacagctatagtaaaatcatgtcatgccactgagagtacagagtcatctcttaatattgaaggtaattggtacct |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47625112 |
taatctagcagcttaaacagctatagtaaaatcatgtcatgccactgacagtacagagtcatctcttaatattgaaggtaattgttacct |
47625201 |
T |
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