View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20564_low_13 (Length: 310)

Name: NF20564_low_13
Description: NF20564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20564_low_13
NF20564_low_13
[»] chr4 (8 HSPs)
chr4 (4-294)||(8979171-8979461)
chr4 (13-294)||(9000158-9000439)
chr4 (5-295)||(8966240-8966530)
chr4 (13-295)||(9030684-9030966)
chr4 (13-295)||(8954834-8955116)
chr4 (4-274)||(8929388-8929658)
chr4 (13-274)||(8900570-8900831)
chr4 (12-274)||(8914474-8914736)
[»] chr5 (2 HSPs)
chr5 (12-274)||(20074028-20074290)
chr5 (5-274)||(9400259-9400528)
[»] chr7 (2 HSPs)
chr7 (197-273)||(3619978-3620054)
chr7 (197-273)||(3630354-3630430)
[»] scaffold0287 (1 HSPs)
scaffold0287 (197-273)||(15655-15731)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 4 - 294
Target Start/End: Complemental strand, 8979461 - 8979171
Alignment:
Q  4 atgtcgaagaaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgttt 103  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  8979461 atgtccaataaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaagtattaggatctctttgaatagcccagacgttt 8979362  T
Q  104 acatacaatattgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatctta 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  8979361 acatacaatattgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcagtggagctggtaggtacaatctta 8979262  T
Q  204 atgtctcttttatcactgccttcaaatatagagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcctaatttc 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8979261 atgtctcttttatcactgccttcaaatatagagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcctaatttc 8979171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 294
Target Start/End: Original strand, 9000158 - 9000439
Alignment:
Q  13 aaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgtttacatacaat 112  Q
    |||||||||||||||||||| |||||| || ||||||||||||||||||||||||||   |||||| ||||| ||||||||||| || || |||||||||    
T  9000158 aaaatttatagaactttctaagaatctttcaggataaaattcttctggatttttccaaacattagggtctctctgaatagcccaagcattcacatacaat 9000257  T
Q  113 attgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaatgtctctt 212  Q
    ||||| | ||||||||||||||| ||| | ||| ||||  |||| | |||||||||| | | ||| |  ||||||||||||| ||||||||  |||||||    
T  9000258 attgtcttggctggaatattgtatccacttatagtgcaattttcacgtgattctctttgcataagtagaggggctggtaggtgcaatcttagcgtctctt 9000357  T
Q  213 ttatcactgccttcaaatatagagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcctaatttc 294  Q
    | |||||||||||||||||  |  |||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||    
T  9000358 taatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaaatctttttcacctcccaaatttctaatttc 9000439  T

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Target: chr4; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 5 - 295
Target Start/End: Original strand, 8966240 - 8966530
Alignment:
Q  5 tgtcgaagaaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgttta 104  Q
    |||| |||||||||  | |||| ||| | |||||||||||||||||| |||||||||||||||||  || | || ||||||||||||||||| || || |    
T  8966240 tgtccaagaaaattcgtcgaacattccaagaatctctcgggataaaactcttctggatttttccaattacttgggtctctttgaatagcccaagcattca 8966339  T
Q  105 catacaatattgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaa 204  Q
    |||||| |||||| | ||||||||| ||||| ||| | ||||||||  |||| |||||||||||||| ||||| | |||||  ||||||| |||||| ||    
T  8966340 catacactattgtgttggctggaatcttgtaaccacttataatgcacttttctcttgattctcttggaacaagtagtggggtaggtaggtgcaatctcaa 8966439  T
Q  205 tgtctcttttatcactgccttcaaatatagagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcctaatttct 295  Q
     |||||||||||||||||||| |||||| |  ||||||||||||||| ||| ||||  || |||||||||| ||||||||| |||||||||    
T  8966440 cgtctcttttatcactgcctttaaatatgggaaattttgaatatcattttcgtctatgaattcttttttacttcccaagtttctaatttct 8966530  T

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Target: chr4; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 13 - 295
Target Start/End: Complemental strand, 9030966 - 9030684
Alignment:
Q  13 aaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgtttacatacaat 112  Q
    |||||||||||||||||||| |||||| || ||||||||||||||||  |||| |||   |||| | ||||| ||||||||||| || || |||||||||    
T  9030966 aaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtctctctgaatagcccaagcattcacatacaat 9030867  T
Q  113 attgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaatgtctctt 212  Q
    |||||   ||||||||||||||| ||||| ||| ||||  |||| | ||||||||| |  |  ||||||||||||||||| | ||||||||| |||||||    
T  9030866 attgtcctggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaatggggctggtagatgcaatcttaacgtctctt 9030767  T
Q  213 ttatcactgccttcaaatatagagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcctaatttct 295  Q
    | |||||||| ||||||||  |  ||||||||| |||| ||||||||||| ||||||||  |||||||||||| || ||||||    
T  9030766 taatcactgcattcaaataaggtaaattttgaagatcaccttcatctaaataatcttttgcacctcccaagtttctgatttct 9030684  T

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Target: chr4; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 13 - 295
Target Start/End: Complemental strand, 8955116 - 8954834
Alignment:
Q  13 aaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgtttacatacaat 112  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||| ||| ||||  |||  |||||||| ||||||||||| || |||||||| |||    
T  8955116 aaaatttatagaactttctaagaatctctcaggataaaattcttctgggtttatccaaatatctggatctctctgaatagcccaagcatttacatataat 8955017  T
Q  113 attgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaatgtctctt 212  Q
    ||||| |  || ||||| ||||| ||| | ||  | ||  ||||  | ||||| ||||| ||||| | ||||||||||||||  ||||||| ||||||||    
T  8955016 attgtctttgcaggaatgttgtatccacttatggtacaattttcaatagattcccttggcacaagtagtggggctggtaggtgtaatcttagtgtctctt 8954917  T
Q  213 ttatcactgccttcaaatatagagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcctaatttct 295  Q
    | |  |  |||||||||||  || ||||||||||||||||||||| |||||||||||||||| ||||||| || || ||||||    
T  8954916 taactatagccttcaaataaggacaattttgaatatcatcttcatataaaaaatcttttttaactcccaaatttcttatttct 8954834  T

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Target: chr4; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 274
Target Start/End: Original strand, 8929388 - 8929658
Alignment:
Q  4 atgtcgaagaaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgttt 103  Q
    ||||| |||||||||||||||||| |||| ||||||||| |||||||| ||||| |||| ||||||  | | ||  ||||| ||||||| ||| || ||     
T  8929388 atgtccaagaaaatttatagaactctctaagaatctctcaggataaaactcttccggatctttccaaatttcagagtctctatgaatagaccaagcattc 8929487  T
Q  104 acatacaatattgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatctta 203  Q
    ||||| | ||||||||  || ||||||| |||||||   | ||||||  ||||||||| ||||||||| | ||||||||| ||||||||||||||||| |    
T  8929488 acatatactattgtttttgcaggaatatggtagccacctacaatgcacttttcccttgtttctcttggcaaaagcaatggagctggtaggtacaatctca 8929587  T
Q  204 atgtctcttttatcactgccttcaaatatagagaattttgaatatcatcttcatctaaaaaatctttttta 274  Q
    |||||||||||||||| ||||||||||| |   ||||||| | ||||||| | |||| |||||| ||||||    
T  8929588 atgtctcttttatcaccgccttcaaatagacgaaattttgtagatcatctccgtctagaaaatccttttta 8929658  T

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Target: chr4; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 8900570 - 8900831
Alignment:
Q  13 aaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgtttacatacaat 112  Q
    ||||||||||||||||||||  ||||| || |||||||| |||||||| ||||||||   ||  || ||| | ||||||||||| || || ||| |||      
T  8900570 aaaatttatagaactttctaaaaatctttcaggataaaactcttctgggtttttccaaacatctgggtctgtatgaatagcccaagcattcacaaacaca 8900669  T
Q  113 attgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaatgtctctt 212  Q
    || |  |  || ||||| | ||||||| | ||||||||  ||||||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||    
T  8900670 atcgcctttgcaggaatttggtagccacttataatgcacttttcccttgtttctcttggcacaagcaatgggcctggtaggtacaatctcaatgtctctt 8900769  T
Q  213 ttatcactgccttcaaata-tagagaattttgaatatcatcttcatctaaaaaatctttttta 274  Q
    |||||||||||||||| ||  ||| ||||||| |||||||||||||||| ||| |||||||||    
T  8900770 ttatcactgccttcaagtaggaga-aattttgtatatcatcttcatctataaattctttttta 8900831  T

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Target: chr4; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 274
Target Start/End: Original strand, 8914474 - 8914736
Alignment:
Q  12 gaaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgtttacatacaa 111  Q
    ||||||||| |||||||||||  |||||||| ||||||||||||||||| ||||||||   ||| |  ||| | ||||||||||| || || ||| |||     
T  8914474 gaaaatttaaagaactttctaaaaatctctctggataaaattcttctgggtttttccaaacatttgagtctgtatgaatagcccaagcattcacaaacac 8914573  T
Q  112 tattgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaatgtctct 211  Q
    ||| |  |  || ||||| | | ||||||| ||| ||||| ||||  ||| |||||||||  |||||||||||||||| ||||||||||| |||||||||    
T  8914574 tatcgcctttgcgggaatttggaagccatttatagtgcatttttcagttgtttctcttggcgcaagcaatggggctggcaggtacaatctcaatgtctct 8914673  T
Q  212 tttatcactgccttcaaatatagagaattttgaatatcatcttcatctaaaaaatctttttta 274  Q
    |||||||||||||| || ||     ||||| | |||||||||||||||| ||| |||||||||    
T  8914674 tttatcactgcctttaagtaggacaaatttcgtatatcatcttcatctataaattctttttta 8914736  T

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Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 12 - 274
Target Start/End: Original strand, 20074028 - 20074290
Alignment:
Q  12 gaaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgtttacatacaa 111  Q
    |||||||||| ||||||||||  |||||||| ||||||||||||||||||||||||||   |||||| ||| | ||||||||||| || || ||| |||     
T  20074028 gaaaatttatcgaactttctaaaaatctctcaggataaaattcttctggatttttccaaacattagggtctgtatgaatagcccaagcattcacaaacac 20074127  T
Q  112 tattgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaatgtctct 211  Q
    ||  |  |  || ||||| | |||||||   ||| ||||  ||||||||| ||||||||| ||||||||||||||||| | ||||||||| | |||||||    
T  20074128 taccgcctttgccggaatttggtagccacctatagtgcacttttcccttgtttctcttggcacaagcaatggggctggcaagtacaatctcagtgtctct 20074227  T
Q  212 tttatcactgccttcaaata-tagagaattttgaatatcatcttcatctaaaaaatctttttta 274  Q
    ||||||||||||||||| ||  ||| ||||||| |||||||||||||||| ||| |||||||||    
T  20074228 tttatcactgccttcaagtaggaga-aattttgtatatcatcttcatctataaattctttttta 20074290  T

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Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 5 - 274
Target Start/End: Original strand, 9400259 - 9400528
Alignment:
Q  5 tgtcgaagaaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaggtattaggatctctttgaatagcccaggcgttta 104  Q
    |||| ||||||||||||||||||||||| ||||||||| |||||||| |||||||||| ||||||   |||||  ||||| ||||||||||| || || |    
T  9400259 tgtccaagaaaatttatagaactttctaagaatctctctggataaaactcttctggatctttccaaacattagagtctctatgaatagcccaagcattca 9400358  T
Q  105 catacaatattgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcaatggggctggtaggtacaatcttaa 204  Q
    |||||| |||||| |  |||||||| | ||| |||   ||| ||||  ||||| |||| || ||||| |  ||||||||   ||||||| | ||||| ||    
T  9400359 catacactattgtctttgctggaatctggtaaccacctatagtgcacatttccattgactcccttggcagtagcaatggatttggtaggaataatctcaa 9400458  T
Q  205 tgtctcttttatcactgccttcaaata-tagagaattttgaatatcatcttcatctaaaaaatctttttta 274  Q
    |||||||||||| ||||||||||| ||  ||| ||||||| |||||||||||||||||||| |||||||||    
T  9400459 tgtctcttttatgactgccttcaagtaggaga-aattttgtatatcatcttcatctaaaaagtctttttta 9400528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 3619978 - 3620054
Alignment:
Q  197 aatcttaatgtctcttttatcactgccttcaaatatagagaattttgaatatcatcttcatctaaaaaatctttttt 273  Q
    ||||||||||||||||||||||| ||||| ||||||| | | ||||||||||||||||||||||  || ||||||||    
T  3619978 aatcttaatgtctcttttatcacagccttaaaatatacaaacttttgaatatcatcttcatctatgaactctttttt 3620054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 3630354 - 3630430
Alignment:
Q  197 aatcttaatgtctcttttatcactgccttcaaatatagagaattttgaatatcatcttcatctaaaaaatctttttt 273  Q
    ||||||||||| ||||||||||| ||||| | ||||| |   ||||||||||||||||||||||  || ||||||||    
T  3630354 aatcttaatgtttcttttatcacagccttaagatatacaagcttttgaatatcatcttcatctatgaactctttttt 3630430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 15731 - 15655
Alignment:
Q  197 aatcttaatgtctcttttatcactgccttcaaatatagagaattttgaatatcatcttcatctaaaaaatctttttt 273  Q
    ||||||||||| ||||||||||| ||||| | ||||| |   ||||||||||||||||||||||  || ||||||||    
T  15731 aatcttaatgtttcttttatcacagccttaagatatacaagcttttgaatatcatcttcatctatgaactctttttt 15655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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