View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20564_low_16 (Length: 267)
Name: NF20564_low_16
Description: NF20564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20564_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 6 - 219
Target Start/End: Original strand, 53495939 - 53496142
Alignment:
| Q |
6 |
acttcgtttaatcattatcataagagtgaagttttattctggtctctaatgnnnnnnnntatggaacagttagtctctaaacaaaaattcatagacaaat |
105 |
Q |
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| T |
53495939 |
acttcgtttaatcattatcataagagtgaagttttattctggtctctaatgaaaaaaaatatggaacagttagtctctaaacaaaaattcatagacaaat |
53496038 |
T |
|
| Q |
106 |
tcagtgattacatagacagttaaatcgactgtgttgcattaacaatatttagtaggagacattgtggcactgtaacaaagaaaatgaaagggtataagta |
205 |
Q |
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| T |
53496039 |
tcagtgattacatagacagttaaatcgactgtg----------aatatttagtaggagacattgtggcactgtaacaaaaaaaatgaaagggtataagta |
53496128 |
T |
|
| Q |
206 |
agtcccacacaaaa |
219 |
Q |
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|||||||||||||| |
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| T |
53496129 |
agtcccacacaaaa |
53496142 |
T |
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