View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20564_low_17 (Length: 251)
Name: NF20564_low_17
Description: NF20564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20564_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 3211349 - 3211119
Alignment:
| Q |
1 |
tcaatttgctatcaaaacattaacttatataaaactaaaatagtattgatatttagcttcatacctaatgggattttgcacttcagaatgaaatatttcg |
100 |
Q |
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| T |
3211349 |
tcaatttgctatcaaaacattaacttatataaaactaaaatagtattgatatttagcttcatacctaatgggattttgcacttcagaatgaaatatttcg |
3211250 |
T |
|
| Q |
101 |
ttaatgatctcaacacctacctaaattgattttcagacacaatattcctctcatcaatcaaacaacatggtagctagtctagtcaaagttgaagtcatca |
200 |
Q |
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| T |
3211249 |
ttaatgatctcaacacctacctaaattgattttcagacacaatattcctctcatcaatcaaacaacatggtagctagtctagtcaaagttgaagtcatca |
3211150 |
T |
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| Q |
201 |
agctaattataagcttgttacttgtgcataaaca |
234 |
Q |
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||||| |||||||||||||||||||||||||| |
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| T |
3211149 |
agcta---ataagcttgttacttgtgcataaaca |
3211119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 38 - 234
Target Start/End: Complemental strand, 3195307 - 3195114
Alignment:
| Q |
38 |
aaatagtattgatatttagcttcatacctaatgggattttgcacttcagaatgaaatatttcgttaatgatctcaacacctacctaaattgattttcaga |
137 |
Q |
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|||||||||||||||||| |||||||||||||| |||| ||||||||| | | ||||||| ||||||||||||| || ||||||||||||| |||||| |
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| T |
3195307 |
aaatagtattgatatttaacttcatacctaatgagattctgcacttcatatggtaatatttacttaatgatctcaagacatacctaaattgatattcaga |
3195208 |
T |
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| Q |
138 |
cacaatattcctctcatcaatcaaacaacatggtagctagtctagtcaaagttgaagtcatcaagctaattataagcttgttacttgtgcataaaca |
234 |
Q |
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| T |
3195207 |
cacaatattcctctcatcaatcaaacaacatggtagctagtctagtcaaagttgaagtcatcaagcta---ataagcttgttacttgtgcataaaca |
3195114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 3218746 - 3218676
Alignment:
| Q |
111 |
caacacctacctaaattgattttcagacacaatattcctctcatcaatcaaacaacatggtagctagtcta |
181 |
Q |
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||||||||||||||||| || ||||| | |||| |||||||||||||||||||||||||||||||| |||| |
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| T |
3218746 |
caacacctacctaaatttatattcagcctcaatgttcctctcatcaatcaaacaacatggtagctattcta |
3218676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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