View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20564_low_19 (Length: 250)
Name: NF20564_low_19
Description: NF20564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20564_low_19 |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 1030795 - 1030566
Alignment:
| Q |
16 |
atcacacagattctaacattcttcataaaccaaggaaccaagtatttacaatgtataaatagaataataaggcaactacatgtattaataatctaaataa |
115 |
Q |
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| T |
1030795 |
atcacacagattccaacattcttcataaaccaaggaaccaagtatttacaatgtataaatagaataataaggcaactacatgtattaataatctaaataa |
1030696 |
T |
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| Q |
116 |
tttccaataaatattgcctaacatttcgctatcaaatgtccaattttattagaaccacaaaatttgcaccaatttgatccatgcaaccgtattagacttt |
215 |
Q |
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| T |
1030695 |
tttccaataaatattgcctaacatttcgctatcatatgtccaatt---ttagaaccac--aatttgcaccaatttgatccatgcaaccgtattagacttt |
1030601 |
T |
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| Q |
216 |
agaaaaaactgtatgattggacctccttgacgaac |
250 |
Q |
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| T |
1030600 |
agaaaaaactgtatgattggacctccttgacgaac |
1030566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 242
Target Start/End: Complemental strand, 40833351 - 40833124
Alignment:
| Q |
23 |
agattctaacattcttcataaaccaaggaaccaagtatttacaatgtataaatagaataataaggc-----------aactacatgtattaataatctaa |
111 |
Q |
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| T |
40833351 |
agattccaacattcttcgtagaccaaggaagcaagtatttacaatgtataaatagaataataaagctcactttcttaaaccacatgaaataacaatctaa |
40833252 |
T |
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| Q |
112 |
ataatttccaataaatattgcctaacatttcgctatcaaatgtccaattttattagaaccacaaaatttgcaccaatttgatccatgcaaccgtattaga |
211 |
Q |
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| T |
40833251 |
ataatttccaataaataccggctaacatacccctatcaaatgtccaattttg---gaaccacaaaatttgcaccaatttgatacattccatcatactaga |
40833155 |
T |
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| Q |
212 |
ctttagaaaaaactgtatgattggacctcct |
242 |
Q |
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| T |
40833154 |
ctttaaaaaaaactgtattattggacctcct |
40833124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 157 - 250
Target Start/End: Complemental strand, 46554249 - 46554156
Alignment:
| Q |
157 |
aattttattagaaccacaaaatttgcaccaatttgatccatgcaaccgtattagactttagaaaaaactgtatgattggacctccttgacgaac |
250 |
Q |
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| T |
46554249 |
aattttattagaaccacaaaatttgcaccaatttgatccatgcaaccgtattagactttagaaaaaactgtatgattggacctccttgacgaac |
46554156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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