View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20564_low_2 (Length: 703)
Name: NF20564_low_2
Description: NF20564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20564_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 491 - 689
Target Start/End: Original strand, 38207601 - 38207799
Alignment:
| Q |
491 |
gcaagagaatgtaccttaaggtttattgttgaagaatgaatatgaatgaaattagggtttagaaaaatgtagtggagttgcaatttatagaatgaaatga |
590 |
Q |
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| T |
38207601 |
gcaagagaatgtaccttaaggtttattgttgaagaatgaatatgaatgaaattagggtttagaaaaatgtagtggagtagcaatttatagaatgaaatga |
38207700 |
T |
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| Q |
591 |
agtgtaaaggaaaaagagtggaagacgaaagagggaaagttttaagagtgtttttagcacactcagactcagtctcacgccaaaaacgtactgtctctg |
689 |
Q |
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| T |
38207701 |
agtgtaaaggaaaaagagtggaagacgaaagagggaaagttttaagagtgtttttagcacactcagactcagtctcacgccaaaaacgtactgtctctg |
38207799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 299 - 424
Target Start/End: Original strand, 38207409 - 38207534
Alignment:
| Q |
299 |
cttttcagcagcataatgcaaaaagaggcatgttactactgttaatctgttgtaataacgttgattttgataaagcaagaatgaaggagtgaaattgaaa |
398 |
Q |
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| T |
38207409 |
cttttcagcagcataatgcaaaaagaggcatgttactactgttaatctgttgtaataacgttgattttgataaagcaagaatgaaggagtgaaattgaaa |
38207508 |
T |
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| Q |
399 |
gcgagagaataaagcgagtgttagtg |
424 |
Q |
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| T |
38207509 |
gcgagagaataaagcgagtgttagtg |
38207534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 38207132 - 38207218
Alignment:
| Q |
19 |
acaaaggtgactaataaaaatctaggaatgaacttatacaaaggattaactaaatataaagctaatttatcttttaagcagcatttg |
105 |
Q |
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| T |
38207132 |
acaaaggtgactaataaaaatctaggaatgaacttatacaaaggattaactaaatataaagctaatttatcttttaagcagcatttg |
38207218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 38207254 - 38207330
Alignment:
| Q |
144 |
gagtgtaacttttcagtaatacttgtgaacccatgctcattttccagaaattttgtaacaatatcttcaacacacac |
220 |
Q |
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| T |
38207254 |
gagtgtaacttttaagtaatacttgtgaacccatgctcattttccagaaattttgtaacaatatcttcaacacacac |
38207330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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