View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20564_low_23 (Length: 236)

Name: NF20564_low_23
Description: NF20564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20564_low_23
NF20564_low_23
[»] chr7 (4 HSPs)
chr7 (1-229)||(23564123-23564351)
chr7 (47-228)||(23588655-23588840)
chr7 (44-190)||(24454638-24454783)
chr7 (48-150)||(23597540-23597642)
[»] chr2 (2 HSPs)
chr2 (64-190)||(13962838-13962963)
chr2 (83-128)||(15175686-15175731)
[»] chr5 (1 HSPs)
chr5 (65-122)||(28430348-28430405)
[»] chr4 (1 HSPs)
chr4 (66-147)||(2257147-2257228)
[»] chr1 (1 HSPs)
chr1 (65-147)||(28337990-28338072)
[»] chr8 (1 HSPs)
chr8 (92-148)||(9830499-9830555)


Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 23564123 - 23564351
Alignment:
Q  1 aactcatacaaagcggtgcgatatacattaattttatcgaataattgaataaaactacacattgcaattgtattcaaaggaaactcaacatattacattg 100  Q
    ||||||||||||| ||||||| |||||||||||||||  ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23564123 aactcatacaaagtggtgcgacatacattaattttattcaatgattgaataaaactacgcattgcaattgtattcaaaggaaactcaacatattacattg 23564222  T
Q  101 tttaagtagttatagagaaggtcttctatctgacgtaacctaggaaattagatattcacgttatctacacataaacaaatgaatatgtaagaaaatacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||| || || | ||||||||||||||||||||||||||||||||||||||||    
T  23564223 tttaagtagttatagagaaggtcttctatctgacgtaacatgggaaattagctactcgccttatctacacataaacaaatgaatatgtaagaaaatacaa 23564322  T
Q  201 gaactatgatcttcgtatgatgattcccc 229  Q
     |||||||||||||  |||||||||||||    
T  23564323 aaactatgatcttcaaatgatgattcccc 23564351  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 47 - 228
Target Start/End: Original strand, 23588655 - 23588840
Alignment:
Q  47 gaataaaactacacattgcaattgtattcaaaggaaac---tcaacatattacattgtttaagtagttatagagaaggtct-tctatctgacgtaaccta 142  Q
    |||||||||||  ||||||||||| ||| ||||||||    ||||||| |||||| ||||||||||||| ||||| ||| | ||||  ||| ||||||||    
T  23588655 gaataaaactaagcattgcaattgaattgaaaggaaaaaaatcaacatcttacatggtttaagtagttacagagatggtttatctacatgatgtaaccta 23588754  T
Q  143 ggaaattagatattcacgttatctacacataaacaaatgaatatgtaagaaaatacaagaactatgatcttcgtatgatgattccc 228  Q
    | ||||||| || ||| ||||||||||||||||||||||||||||||| | |||||| ||||||||||| ||||||| ||||||||    
T  23588755 gaaaattagctactcaagttatctacacataaacaaatgaatatgtaaaagaatacatgaactatgatcatcgtatgctgattccc 23588840  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 190
Target Start/End: Original strand, 24454638 - 24454783
Alignment:
Q  44 attgaataaaactacacattgcaattgtattcaaaggaaactcaacatattacattgtttaagtagttatagagaaggtc--ttctatctgacgtaacct 141  Q
    |||||||||||||| |||| | ||||||||||||||||||||| ||  ||||||| ||| ||||| ||||||||||||||  ||  || |||| ||||||    
T  24454638 attgaataaaactaaacatagaaattgtattcaaaggaaactcgactaattacatggttcaagtaattatagagaaggtcaattacat-tgacctaacct 24454736  T
Q  142 aggaaattagatattcacgttatctacacataaacaaatgaatatgtaa 190  Q
    |||||||||| ||  |||  |||||| ||||||||||| ||||||||||    
T  24454737 aggaaattagttacccac--tatctaaacataaacaaaagaatatgtaa 24454783  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 150
Target Start/End: Original strand, 23597540 - 23597642
Alignment:
Q  48 aataaaactacacattgcaattgtattcaaaggaaactcaacatattacattgtttaagtagttatagagaaggtcttctatctgacgtaacctaggaaa 147  Q
    ||||||||||  |||| ||||||||||| ||||||||  |||| ||||||||||| ||||||| ||| ||||||||  |||  |||| ||||||||||||    
T  23597540 aataaaactaagcattacaattgtattctaaggaaacataacaaattacattgttcaagtagtaataaagaaggtcaactaaatgacctaacctaggaaa 23597639  T
Q  148 tta 150  Q
    |||    
T  23597640 tta 23597642  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 190
Target Start/End: Complemental strand, 13962963 - 13962838
Alignment:
Q  64 gcaattgtattcaaaggaaactcaacatattacattgtttaagtagttatagagaaggtcttctatctgacgtaacctaggaaattagatattcacgtta 163  Q
    |||||||||||||||||||||||||||| |||||| ||| ||| ||| | | |||||||| ||||  |||| |||||||||||||||| || ||| | ||    
T  13962963 gcaattgtattcaaaggaaactcaacatgttacatggttcaagcagtcacaaagaaggtcatctacatgacctaacctaggaaattagcta-tcatgcta 13962865  T
Q  164 tctacacataaacaaatgaatatgtaa 190  Q
    |||| ||||||||||| ||||||||||    
T  13962864 tctaaacataaacaaaagaatatgtaa 13962838  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 15175731 - 15175686
Alignment:
Q  83 actcaacatattacattgtttaagtagttatagagaaggtcttcta 128  Q
    |||||||||||||||| ||| |||||| ||||||||||||| ||||    
T  15175731 actcaacatattacatggttcaagtagctatagagaaggtcatcta 15175686  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 28430348 - 28430405
Alignment:
Q  65 caattgtattcaaaggaaactcaacatattacattgtttaagtagttatagagaaggt 122  Q
    |||||||||||||||| ||||||||  || |||||||| |||||||||||||||||||    
T  28430348 caattgtattcaaagggaactcaactgataacattgttcaagtagttatagagaaggt 28430405  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 2257147 - 2257228
Alignment:
Q  66 aattgtattcaaaggaaactcaacatattacattgtttaagtagttatagagaaggtcttctatctgacgtaacctaggaaa 147  Q
    ||||||||||||||| |||| |||||||||||| |||||| ||| || || ||||||| ||||  |||| ||||||| ||||    
T  2257147 aattgtattcaaaggtaactgaacatattacatggtttaaatagctacagtgaaggtcatctacatgacctaacctaagaaa 2257228  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 28338072 - 28337990
Alignment:
Q  65 caattgtattcaaaggaaactcaacatattacattgtttaagtagttatagagaaggtcttctatctgacgtaacctaggaaa 147  Q
    |||||||||||||||| |||||||| || ||||| |||||| ||| |  |||||||||| ||||  | || ||||||||||||    
T  28338072 caattgtattcaaaggtaactcaacgtaatacatggtttaattagctgcagagaaggtcatctacatcacctaacctaggaaa 28337990  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 9830555 - 9830499
Alignment:
Q  92 attacattgtttaagtagttatagagaaggtcttctatctgacgtaacctaggaaat 148  Q
    ||||||| ||| ||||||||||||||| |||| ||||| |||| |||| ||||||||    
T  9830555 attacatagttcaagtagttatagagatggtcatctatatgacataacttaggaaat 9830499  T

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