View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20564_low_24 (Length: 227)
Name: NF20564_low_24
Description: NF20564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20564_low_24 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 50460083 - 50460309
Alignment:
| Q |
1 |
tacggctactactagttagttatatatatgcaatgcagggcaattaatgttacttcatcacaatattataatactctatccattagtttcttcagctagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50460083 |
tacggctactactagttagttatatatatgcaatgcagggcaattaatgttacttcatcacaatattataatactctatccattagtttcttcagctagt |
50460182 |
T |
|
| Q |
101 |
ggcatgttttgtgcacattataaatctcattgattttgacacattttagcaaagaggtccatagcataaaacaatattctgatcattcagaacttcatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50460183 |
ggcatgttttgtgcacattataaatctcattgattttgacacattttagcaaagaggtccatagcataaaacaatattctgatcattcagaacttcatta |
50460282 |
T |
|
| Q |
201 |
ctttgataacatattttatcgtgcact |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
50460283 |
ctttgataacatattttatcgtgcact |
50460309 |
T |
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