View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20564_low_28 (Length: 201)
Name: NF20564_low_28
Description: NF20564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20564_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 18507419 - 18507256
Alignment:
| Q |
18 |
gttatgagtccagattgaaaactatgattggtttgataaggatgacaattgatctgaaagcttcttgggaatatatgccatactgttgaagttggagtta |
117 |
Q |
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| T |
18507419 |
gttatgagtccagattgaaaactatgattggtt-gataaggatgacaattgatctgaaagtttcttgggaatatatgccatgctg---aagttggagtta |
18507324 |
T |
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| Q |
118 |
cggtaaaaagctttaatagaatatattgggtggactgtcaaaaaagaagaatatattggacagaacat |
185 |
Q |
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| T |
18507323 |
cggtaaaaagctttaatagaatatattgggtggactgtcaaaaaagaagaatatattggacagaacat |
18507256 |
T |
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