View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20564_low_3 (Length: 551)
Name: NF20564_low_3
Description: NF20564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20564_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 21 - 509
Target Start/End: Complemental strand, 40049072 - 40048572
Alignment:
| Q |
21 |
gtttatcttacaggtcagttatacattttctataacctctatactgttgattccaactacatttattgcaatatgatttgagaaacaataatattaatct |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40049072 |
gtttatcttacaggtcagttatacattttctataacctctatactgttgattccaactacatttattgcaatatgatttgagaaacaataatattaatct |
40048973 |
T |
|
| Q |
121 |
catttcaaagttaacggctcaccacataaaaacttcacacaataattcaagtaaccaaaagagatgcaatgccaataataataa------------gata |
208 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
40048972 |
catttcaaagttaacgggtcaccacataaaaacttcacacgataattcaagtaaccaaaagagatgcaataccaataataataataataataataagata |
40048873 |
T |
|
| Q |
209 |
aaatatccttattcaccatgacagattattgattccaccaaaatcacaactatagaactataacattacacctacccatcatttcattggtctctatata |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| |
|
|
| T |
40048872 |
aaatatccttattcaccatgacagattattgattccaccaaaatcacaactatagaactataacattacacctacccatcatttccttggcctcaatata |
40048773 |
T |
|
| Q |
309 |
aaaccacctctcattactctccaatcaacacatccaacatacaaattaacaaaaaatccaatcatttacgttcctccacaatcttcaatcatcaagccaa |
408 |
Q |
| |
|
|| ||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40048772 |
aatccacctctccttgccatccaatcaacacatccaacatacaaattaacaaaaaatccaatcatttacattcctccacaatcttcaatcatcaagccaa |
40048673 |
T |
|
| Q |
409 |
atatgaatcaaattatcttttccttctcactctttctactcatgttctcctcattgtattctcccaacacagcagcaacagcgacagcaacagcaccagc |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40048672 |
atatgaatcaaattatcttttccttctcactctttctactcatgttctcctcattgtattctcccaacatagcagcaacagcgacagcaacagcaccagc |
40048573 |
T |
|
| Q |
509 |
a |
509 |
Q |
| |
|
| |
|
|
| T |
40048572 |
a |
40048572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University