View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20564_low_5 (Length: 406)
Name: NF20564_low_5
Description: NF20564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20564_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 47617066 - 47617464
Alignment:
| Q |
1 |
agtttgtccttcaagagcagcaaaatgaagtgctccacgcttgtttgcatctttaattgcttcaactgttttggataaatctttgccctcatctaactgt |
100 |
Q |
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| T |
47617066 |
agtttgtccttcaagagaagcaaaatgaagtgctccacgcttgtttgcatctttaattgcttcaactgttttggataaatctttgccctcatctaactgt |
47617165 |
T |
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| Q |
101 |
tccgcaaattctataaaaacaatataaaatcaga----------acaacgaaatagtagataataagttgattaattgaatgattgaattactctttaag |
190 |
Q |
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| T |
47617166 |
tccgcaaattctataaaaacaatataaaatcagatgaatgaagaacaacgaaatagtagataataagttgattaattgaatgattgaattactctttaag |
47617265 |
T |
|
| Q |
191 |
agatcgagattgccggtacgagcagcgttgagaaagtgttgaactttctgcctaactgcaagtgcgtcggaagcatcgggagccatagcgagaacaagga |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47617266 |
agatcgagattgccggtacgagcagcgttgagaaagtgttgaactttctgcctaactgcaagtgcgtcggaagcatcgggagccatagcgagaacaagga |
47617365 |
T |
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| Q |
291 |
cttgaagggattcttcctctgtaatgcaaaaccaaaaccctgtttttctttctttcaaaggagcaaaaccctgtgttgaaacaattcaaagaaaccaaa |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47617366 |
cttgaagggattcttcctctgtaatgcaaaaccaaaaccctgtttttctttctttcaaaggagcaaaaccctgtgttgaaacaattcaaagaaaccaaa |
47617464 |
T |
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