View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20564_low_6 (Length: 405)
Name: NF20564_low_6
Description: NF20564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20564_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 58 - 388
Target Start/End: Original strand, 47617124 - 47617464
Alignment:
| Q |
58 |
gcttcaactgttttggataaatctttgccctcatctaactgttccgcaaattctataaaaacaatataaaatcaga----------acaacgaaatagta |
147 |
Q |
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| T |
47617124 |
gcttcaactgttttggataaatctttgccctcatctaactgttccgcaaattctataaaaacaatataaaatcagatgaatgaagaacaacgaaatagta |
47617223 |
T |
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| Q |
148 |
gataataagttgattaattgaatgattgaattactctttaagagatcgagattgccggtacgagcagcgttgagaaagtgttgaactttctgcctaactg |
247 |
Q |
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| T |
47617224 |
gataataagttgattaattgaatgattgaattactctttaagagatcgagattgccggtacgagcagcgttgagaaagtgttgaactttctgcctaactg |
47617323 |
T |
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| Q |
248 |
caagtgcgtcggaagcatcgggagccatagcgagaacaaggacttgaagggattcttcctctgtaatgcaaaaccaaaaccctgtttttctttctttcaa |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47617324 |
caagtgcgtcggaagcatcgggagccatagcgagaacaaggacttgaagggattcttcctctgtaatgcaaaaccaaaaccctgtttttctttctttcaa |
47617423 |
T |
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| Q |
348 |
aggagcaaaaccctgtgttgaaacaattcaaagaaaccaaa |
388 |
Q |
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| T |
47617424 |
aggagcaaaaccctgtgttgaaacaattcaaagaaaccaaa |
47617464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 47617090 - 47617029
Alignment:
| Q |
1 |
ttttgctgctcttgaaggacaaactcagatttgcagttatcttatagagcatttgaagcttc |
62 |
Q |
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| T |
47617090 |
ttttgcttctcttgaaggacaaactcagatttgcagttatcttatagaggatttgaaacttc |
47617029 |
T |
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