View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20565_low_1 (Length: 479)
Name: NF20565_low_1
Description: NF20565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20565_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 17 - 464
Target Start/End: Original strand, 49450630 - 49451078
Alignment:
| Q |
17 |
atgtccgatgttcgacaccgacacaatatcgatacatgtaattagttacattcaatcacttccaattttttaatcacttcaattattaccagagtcatgg |
116 |
Q |
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| T |
49450630 |
atgtccgatgttcgacaccgacacaatatcgatacatgtaattagttacattcaatcacttccaattttttaatcacttcaattattaccagagtcgtgg |
49450729 |
T |
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| Q |
117 |
tgtctatgtcaagaataatgctagcaacacattatctaacacgtttttctcaacacactctaatcggttgaaatttaaacaagtctcgctaaatttatgt |
216 |
Q |
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| T |
49450730 |
tgtctatgtcaagaataatgctagcaacacattatctaacacgtttttctcaacacactataattggttgaaatttaaacaagtctcgctaaatttatgt |
49450829 |
T |
|
| Q |
217 |
ggtgtctaaataatttcgtgggatccatttgaatttgaacaaagtagagagatagtgtattattagcacatggaagtggttcatagatcaccatacatat |
316 |
Q |
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| T |
49450830 |
ggtgtctaaataatttcgtgggatccatttgaattttaacaaagtagagagatagtgtattattagcacatggaagtggttcatagatcaccatacatat |
49450929 |
T |
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| Q |
317 |
gcccagatttgaaaatctacatcagtgggaatttaggagtaggcgacgactctcaactcccacaat-nnnnnnnnnnnnntagtaactagaaagcagtgc |
415 |
Q |
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| T |
49450930 |
gcccagatttgaaaatctacatcagtgggaatttaggagtaggcgacgactctcaactcccacaataaaaaatttaaaaatagtaactagaaagcagtgc |
49451029 |
T |
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| Q |
416 |
atgcaacaattaacatgaaataaattgtgaattaagagacgtacctatg |
464 |
Q |
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| T |
49451030 |
atgcaataattaacatgaaataaattgtgaattaagaaacgtacctatg |
49451078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 47949055 - 47949117
Alignment:
| Q |
205 |
ctaaatttatgtggtgtctaaataatttcgtgggatccatttgaatttgaacaaagtagagag |
267 |
Q |
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| T |
47949055 |
ctaaatttatgtggggcctacatgatttcgtgggatccaattgaatttcaaccaattagagag |
47949117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 9705350 - 9705304
Alignment:
| Q |
206 |
taaatttatgtggtgtctaaataatttcgtgggatccatttgaattt |
252 |
Q |
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| T |
9705350 |
taaattcatgtggggtctacataattttgtgggatccatttgaattt |
9705304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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