View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20566_low_1 (Length: 737)
Name: NF20566_low_1
Description: NF20566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20566_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 677; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 11 - 719
Target Start/End: Complemental strand, 6186414 - 6185706
Alignment:
| Q |
11 |
cacagatcatacatatatgcaataagaatggtcacatatggaagaaattggggagtgtaacaagctatgtaataggcctacaagggacaaacaatacagt |
110 |
Q |
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| T |
6186414 |
cacagatcatacatatatgcaataagaatggtcacatatggaagaaattggggagtgtaacaagctatgtaataggcctacaagggacaaacaatacagt |
6186315 |
T |
|
| Q |
111 |
gatgcgtaatccataacataattcgatgtagaaatctaagtacacaacaatctgagttactaataagtaaaaacctcatatggtcctaaatttctttaaa |
210 |
Q |
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| T |
6186314 |
gatgcgtaaaccataacataattcgatgtagaaatctaagtacacaacaatctaagttactaataagtaaaaacctcatatggtcctaaatttctttaaa |
6186215 |
T |
|
| Q |
211 |
acaccttaatagccctaaaattaccaattccaaaataacaataaattctcataaccctactaatccttgtatgttgtattcatattttatatcctgctat |
310 |
Q |
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| T |
6186214 |
acaccttaatagccctaaaattaccaattccaaaataacaataaattctcataaccctaataatccttgtatgttgtattcatattttatatcctgctat |
6186115 |
T |
|
| Q |
311 |
tcatattccatgttccatcagatggtaacagtttacaactttgacataaattgaagtttccatcttttatgataagacaatcctaataggtataccatca |
410 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6186114 |
tcatattccatgttccatcagatggtaatagtttacaactttgacataaattgaagtttccatctttcatgataagacaatcctaataggtataccatca |
6186015 |
T |
|
| Q |
411 |
tcaactcgacagaacatcattgttgttacgtggttatagaagtaagtgctatcaggattacgtcaaaccaaatccgtagtcccccaaaaaattcagctaa |
510 |
Q |
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| T |
6186014 |
tcaactcgatagaacatcattgttgttacgtggttatagaagtaagtgctatcaggattacgtcaaacaaaatccgtagtcccccaaaaaattcagctaa |
6185915 |
T |
|
| Q |
511 |
gtaccacgagaatatatcattatggatgctaccttaattttgttcagccaattttgaaccaaaacaacaaaatctttacatgtacttgaaccatcttttt |
610 |
Q |
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| T |
6185914 |
gtaccacgagaatatatcattatggatgctaccttaattttgttcagccaattttgaaccaaaacaacaaaatctttacatgtacttgaaccatcttttt |
6185815 |
T |
|
| Q |
611 |
taagcagtgatttgtctgaaatctcaccaaggctctgcaggacatacaaaagtaagcaaaggaaatgactcagatcataatatcataataaagcataaca |
710 |
Q |
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| T |
6185814 |
taagcagtgatttgtctgaaatgtcaccaaggctctgcaggacatacaaaagtaagcaaaggaaatgactcagatcataatatcataataaagcataaca |
6185715 |
T |
|
| Q |
711 |
tgatcaatc |
719 |
Q |
| |
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| T |
6185714 |
tgatcaatc |
6185706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 541 - 649
Target Start/End: Original strand, 39030374 - 39030482
Alignment:
| Q |
541 |
accttaattttgttcagccaattttgaaccaaaacaacaaaatctttacatgtacttgaaccatcttttttaagcagtgatttgtctgaaatctcaccaa |
640 |
Q |
| |
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|||| ||||||| ||||||| ||||||||| | ||||||||||| |||||||||||||||||||||| || | ||||| |||| | ||||||| ||| |
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| T |
39030374 |
acctgaattttgctcagccatgtttgaaccagactaacaaaatcttcacatgtacttgaaccatcttttctacgaagtgacctgtcagtaatctcatcaa |
39030473 |
T |
|
| Q |
641 |
ggctctgca |
649 |
Q |
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| T |
39030474 |
ggctctgca |
39030482 |
T |
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Back To:
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