View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20566_low_2 (Length: 331)
Name: NF20566_low_2
Description: NF20566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20566_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 50201823 - 50202141
Alignment:
| Q |
1 |
gaagtgtaatgaattttgtgatggtgttttatgttatttatcttgttagctctaatgcatgtatatttaatttttcagcagagacagagtcaattgtggt |
100 |
Q |
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| T |
50201823 |
gaagtgtaatgaattttgtgatggtgttttatgttatttatcttgttagctctaatacatgtatatttaatttttcagcagagacagagtcaattgtggt |
50201922 |
T |
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| Q |
101 |
gaatgtattggaaaagaaggtgatacttacatttagaatatcaacaacaacaactattggtaaagtaatctcaaagaaagttacaccattaaacagaact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50201923 |
gaatgtattggaaaagaaggtgatacttacatttagaatatcaacaacaacaactgttggtaaagtaatctcaaagaaagttacaccattaaacagaact |
50202022 |
T |
|
| Q |
201 |
ccttcccctaaagttgccattatcaaacggatattccgctcatcccgtggttaattagtaa-ttatacacaagttagaaagtaaccacatgtgcataaga |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
50202023 |
ccttcccctaaagttgccattatcaaacggatattccgctcatcccgtggttaattagtaatttatacacaggttagaaagtaaccacatgtgcataaga |
50202122 |
T |
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| Q |
300 |
ttcgtttagattgatttga |
318 |
Q |
| |
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|||| |||||||||||||| |
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| T |
50202123 |
ttcggttagattgatttga |
50202141 |
T |
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