View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20566_low_3 (Length: 331)
Name: NF20566_low_3
Description: NF20566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20566_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 100 - 314
Target Start/End: Original strand, 23914637 - 23914851
Alignment:
| Q |
100 |
atataaattaatttatttatagatggcctgcggctatcaatacaatatcattatataactgcatctcatgattcaatgtagcaatggcagacgtattaac |
199 |
Q |
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| T |
23914637 |
atataaattaatttatttatagatggcctgcggctatcaatacaatatcattatataactgcatctcatgattcaatgtagcaatggcagacgtattaac |
23914736 |
T |
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| Q |
200 |
attcttttcacgagctaagctatcttcacaccttccaagtgcatcactagcatatctgatatccaagtctataaggtccggttcttcaatcaatgcaact |
299 |
Q |
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| T |
23914737 |
attcttttcacgagctaagctatcttcacaccttccaagtgcatcactagcatatctgatatccaagtctataaggtccggttcttcaatcaatgcaact |
23914836 |
T |
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| Q |
300 |
cttaattgaccaacc |
314 |
Q |
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|||||||||||||| |
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| T |
23914837 |
tttaattgaccaacc |
23914851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 45 - 314
Target Start/End: Original strand, 23922223 - 23922488
Alignment:
| Q |
45 |
ttgaaaacacaataataca-gtgaggagaaaaattatggttttattcatgaaatatatataaattaatttatttatagatggcctgcggctatcaataca |
143 |
Q |
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| T |
23922223 |
ttgaaaacataataatacaagtgaggagaaaa-ttgtggttttattcatgaaatata----aatttatttatttatagatggcctccggctatcaataca |
23922317 |
T |
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| Q |
144 |
atatcattatataactgcatctcatgattcaatgtagcaatggcagacgtattaacattcttttcacgagctaagctatcttcacaccttccaagtgcat |
243 |
Q |
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| T |
23922318 |
atatcattatataactgcatctcatgattcaatgtagcaatggcagacgtattaacattcttttcacgagctaagctatcttcacacctaccaagtgcat |
23922417 |
T |
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| Q |
244 |
cactagcatatctgatatccaagtctataaggtccggttcttcaatcaatgcaactcttaattgaccaacc |
314 |
Q |
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| T |
23922418 |
cactagcatatttgatatccaagtctatagtgtccggttcttcaatcaatgcaacttttaattgaccaacc |
23922488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 221
Target Start/End: Original strand, 25802696 - 25802817
Alignment:
| Q |
100 |
atataaattaatttatttatagatggcctgcggctatcaatacaatatcattatataactgcatctcatgattcaatgtagcaatggcagacgtattaac |
199 |
Q |
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||||||||| || ||| ||||||| ||| | ||||||| |||||||||| |||| |||| |||||||||||||| ||||||||||| ||| ||||||| |
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| T |
25802696 |
atataaattttttgattcatagatgacctccagctatcactacaatatcagtatacaactccatctcatgattcagtgtagcaatggaagaaatattaac |
25802795 |
T |
|
| Q |
200 |
attcttttcacgagctaagcta |
221 |
Q |
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| T |
25802796 |
aatcttttcattagctaagcta |
25802817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 254
Target Start/End: Original strand, 35079333 - 35079473
Alignment:
| Q |
114 |
atttatagatggcctgcggctatcaatacaatatcattatataactgcatctcatgattcaatgtagcaatggcagacgtattaacattcttttcacgag |
213 |
Q |
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| T |
35079333 |
atttatagatggcctccggctatgactacaatatctgtatacaacatcatctcatgattcaatgcagcaatggaagaagtattaacaatcttttcgttag |
35079432 |
T |
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| Q |
214 |
ctaagctatcttcacaccttccaagtgcatcactagcatat |
254 |
Q |
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| T |
35079433 |
ccaagctacgttcacacatgtcaagtgcatcgctagcatat |
35079473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 103 - 253
Target Start/End: Original strand, 35074353 - 35074503
Alignment:
| Q |
103 |
taaattaatttatttatagatggcctgcggctatcaatacaatatcattatataactgcatctcatgattcaatgtagcaatggcagacgtattaacatt |
202 |
Q |
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|||||| ||| ||||||||||||||| ||||||||| |||||||| | ||||||| ||| |||||||||| || | |||||| ||| ||||| ||| | |
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| T |
35074353 |
taaatttattaatttatagatggcctccggctatcactacaatatttgtgtataacttcatgtcatgattcagtgcaacaatggaagaagtattgacaat |
35074452 |
T |
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| Q |
203 |
cttttcacgagctaagctatcttcacaccttccaagtgcatcactagcata |
253 |
Q |
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||||||| ||| |||||| ||||||| | |||||||||| |||||||| |
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| T |
35074453 |
cttttcatcagccaagctacgttcacacatgtcaagtgcatcgctagcata |
35074503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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