View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20566_low_4 (Length: 241)
Name: NF20566_low_4
Description: NF20566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20566_low_4 |
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| [»] scaffold0928 (1 HSPs) |
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Alignment Details
Target: scaffold0928 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: scaffold0928
Description:
Target: scaffold0928; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 2956 - 2745
Alignment:
| Q |
14 |
gaaggagggaaatgcttttgttatcttctccatggtagtaatcgtcacctcatgtcccaatcaaagagagatgttacaaaatagtggtacaacagatttc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2956 |
gaaggagggaaatgcttttgttatcttctccatggtagtaactgtcacctcatgtcccaatcaaagagagatgtaacaaaatagtggtacaacagatttc |
2857 |
T |
|
| Q |
114 |
caaaagatatgtaattccata-tttagttgtgcctttaattaaatcttgaagcctatgttgggcgttggagtgtgtctttagttaaaataatctaccatg |
212 |
Q |
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|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2856 |
cagaagatatgtaattccatattttagttgtgcctttaattaaatcttgaagcctatgttgggcgttggagtgtgtctttggttaaaataatctaccatg |
2757 |
T |
|
| Q |
213 |
gcctgtagtttg |
224 |
Q |
| |
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|| ||||||||| |
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| T |
2756 |
gcttgtagtttg |
2745 |
T |
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Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 5312683 - 5312472
Alignment:
| Q |
14 |
gaaggagggaaatgcttttgttatcttctccatggtagtaatcgtcacctcatgtcccaatcaaagagagatgttacaaaatagtggtacaacagatttc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5312683 |
gaaggagggaaatgcttttgttatcttctccatggtagtaactgtcacctcatgtcccaatcaaagagagatgtaacaaaatagtggtacaacagatttc |
5312584 |
T |
|
| Q |
114 |
caaaagatatgtaattccata-tttagttgtgcctttaattaaatcttgaagcctatgttgggcgttggagtgtgtctttagttaaaataatctaccatg |
212 |
Q |
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|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5312583 |
cagaagatatgtaattccatattttagttgtgcctttaattaaatcttgaagcctatgttgggcgttggagtgtgtctttggttaaaataatctaccatg |
5312484 |
T |
|
| Q |
213 |
gcctgtagtttg |
224 |
Q |
| |
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|| ||||||||| |
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| T |
5312483 |
gcttgtagtttg |
5312472 |
T |
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Back To:
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Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 54754006 - 54753795
Alignment:
| Q |
14 |
gaaggagggaaatgcttttgttatcttctccatggtagtaatcgtcacctcatgtcccaatcaaagagagatgttacaaaatagtggtacaacagatttc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
54754006 |
gaaggagggaaatgcttttgttatcttctccatggtagtaactgtcacctcatgtcccaatcaaagagagatgtaacaaaatagtggtacaacagatttc |
54753907 |
T |
|
| Q |
114 |
caaaagatatgtaattccata-tttagttgtgcctttaattaaatcttgaagcctatgttgggcgttggagtgtgtctttagttaaaataatctaccatg |
212 |
Q |
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|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
54753906 |
cagaagatatgtaattccatattttagttgtgcctttaattaaatcttgaagcctatgttgggcgttggagtgtgtctttggttaaaataatctaccatg |
54753807 |
T |
|
| Q |
213 |
gcctgtagtttg |
224 |
Q |
| |
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|| ||||||||| |
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| T |
54753806 |
gcttgtagtttg |
54753795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 29516159 - 29516369
Alignment:
| Q |
15 |
aaggagggaaatgcttttgttatcttctccatggtagtaatcgtcacctcatgtcccaatcaaagagagatgttacaaaatagtggtacaacagatttcc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||| |||||| | |
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| T |
29516159 |
aaggagggaaatgcttttgttatcttctccatggtagtaactgtcacctcatgtcccaatcatggagagatgtaacaaaatagtggtacaaaagattttc |
29516258 |
T |
|
| Q |
115 |
aaaagatatgtaattccata-tttagttgtgcctttaattaaatcttgaagcctatgttgggcgttggagtgtgtctttagttaaaataatctaccatgg |
213 |
Q |
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| ||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29516259 |
agaaggtatgtaatttcatattttagttgtgcctttaattaaatcttgaagcctatgttgggcgttggagtgtgtctttggttaaaataatctaccatgg |
29516358 |
T |
|
| Q |
214 |
cctgtagtttg |
224 |
Q |
| |
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| ||||||||| |
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| T |
29516359 |
cttgtagtttg |
29516369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 53345214 - 53345415
Alignment:
| Q |
18 |
gagggaaatgcttttgttatcttctccatggtagtaatcgtcacctcatgtcccaatcaaagagagatgttacaaaatagtggtacaacagatttccaaa |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||| | | |
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| T |
53345214 |
gagggaaatgcctttgttatcttctccatggtagtaactgtcacctcatgtcccaatcaaagagagatgtaacaaaatagtggtataacaaag------a |
53345307 |
T |
|
| Q |
118 |
agatatgtaattccatattt-agttgtgcctttaattaaatcttgaagcctatgttgggcgttggagtgtgtctttagttaaaataatctaccatggcct |
216 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
53345308 |
agatatgtaattccatattttagttgtgcctttaattaaatcttgaagcctatgttgggcgttggagtgtgtctttggttaaaataatctaccatggctt |
53345407 |
T |
|
| Q |
217 |
gtagtttg |
224 |
Q |
| |
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|||||||| |
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| T |
53345408 |
gtagtttg |
53345415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 9147468 - 9147679
Alignment:
| Q |
14 |
gaaggagggaaatgcttttgttatcttctccatggtagtaatcgtcacctcatgtcccaatcaaagagagatgttacaaaatagtggtacaacagatttc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
9147468 |
gaaggagggaaatgcttttgttatcttctcgatggtagtaactgtcacctcatgtcccaatcaaagagagatgtaacaaaatagtggtacaccagatttc |
9147567 |
T |
|
| Q |
114 |
caaaagatatgtaattccata-tttagttgtgcctttaattaaatcttgaagcctatgttgggcgttggagtgtgtctttagttaaaataatctaccatg |
212 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9147568 |
cagaagatatgtaattccatattttagttgtgcctttaatcaaatcttgaagcctatgttgggcgttggagtgtgtctttggttaaaataatctaccatg |
9147667 |
T |
|
| Q |
213 |
gcctgtagtttg |
224 |
Q |
| |
|
|| ||||||||| |
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|
| T |
9147668 |
gcttgtagtttg |
9147679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 224
Target Start/End: Original strand, 23457735 - 23457833
Alignment:
| Q |
120 |
atatgtaattccatattt-agttgtgcctttaattaaatcttgaagcctatgttgggcgttggagtgtgtctttagttaaaataatctaccatggcctgt |
218 |
Q |
| |
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|||| ||||||||||||| | | |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||| ||| |
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| T |
23457735 |
atatataattccatattttaatagtgcctttaattaaatcttgaagcctat-------gttggagtgtgtctttggttaaaataatctatcatggcttgt |
23457827 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 23455123 - 23455230
Alignment:
| Q |
20 |
gggaaatgcttttgttatcttctccatggtagtaatcgtcac-----ctcatgtcccaatcaaagagagatgttacaaaatagtggtacaacagatttcc |
114 |
Q |
| |
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|||||| ||||||||||||||||||| |||||||| | |||| |||| ||||||| |||||||||||| || |||||||||||| || ||| ||| |
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| T |
23455123 |
gggaaaggcttttgttatcttctccaaggtagtaaccatcacctcaactcaagtcccaaccaaagagagatgcaacgaaatagtggtacgacggatatcc |
23455222 |
T |
|
| Q |
115 |
aaaagata |
122 |
Q |
| |
|
| |||||| |
|
|
| T |
23455223 |
agaagata |
23455230 |
T |
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