View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20566_low_5 (Length: 235)
Name: NF20566_low_5
Description: NF20566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20566_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 47528250 - 47528045
Alignment:
| Q |
18 |
agattgaatcacatgcttctcattttccgttgatgttgataatgtagtaaccgtggcttttttaacagaaatgaaactagaggcttcagaatcctcatta |
117 |
Q |
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| T |
47528250 |
agattgaatcacatgcttctcattttccgttgatgttgataatgtagtaaccgtggcttttttaacagaaatgaaactagaggcttcagaatcctcatta |
47528151 |
T |
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| Q |
118 |
gaagtaaattcaaaggatttcaaagacattgctattgctgctgcttcctcggattcatttggttgctttttcgacagtaatggagacagagaaattgttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
47528150 |
gaagtaaattcaaaggatttcaaagacattgctattgctgctgcttcctcggattcatttggttgctttttcggctgtaatggagacagagaaattgttt |
47528051 |
T |
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| Q |
218 |
ttgatg |
223 |
Q |
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|||||| |
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| T |
47528050 |
ttgatg |
47528045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 47522506 - 47522425
Alignment:
| Q |
93 |
actagaggcttcagaatcctcattagaagtaaattcaaaggatttcaaagacattgctattgctgctgcttcctcggattca |
174 |
Q |
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|||||||||||||||||| |||| |||||| ||||| |||| |||| |||| ||||||||||||||||||||||||| |
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| T |
47522506 |
actagaggcttcagaatcgtcatcagaagttgattcatctgattcagaagaaattgatattgctgctgcttcctcggattca |
47522425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 47522262 - 47522191
Alignment:
| Q |
145 |
attgctattgctgctgcttcctcggattcatttggttgctttttcgacagtaatggagacagagaaattgtt |
216 |
Q |
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| T |
47522262 |
attgatattgctgctgtttcctcagattctctcggtctctttttcgactgcaatggagacagagaaattgtt |
47522191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 47527727 - 47527656
Alignment:
| Q |
145 |
attgctattgctgctgcttcctcggattcatttggttgctttttcgacagtaatggagacagagaaattgtt |
216 |
Q |
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|||| |||||||||||||||||| ||||| | || ||| ||||||| |||||||||||| |||||||||| |
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| T |
47527727 |
attgatattgctgctgcttcctcagattctctcagtcgctctttcgactgtaatggagacaaagaaattgtt |
47527656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 44871653 - 44871757
Alignment:
| Q |
18 |
agattgaatcacatgcttctcattttccgttgatgttgataatgtagtaaccgtggcttttttaacagaaatgaaactagaggcttcagaatcctcatta |
117 |
Q |
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||||||| ||||||| |||||||||||| ||| |||||||| |||||||||| ||||||||||||||| || ||| ||||| |||||||||||||| | |
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| T |
44871653 |
agattgactcacatgattctcattttccattgttgttgataccatagtaaccgtagcttttttaacagaactggaacaagaggtttcagaatcctcatca |
44871752 |
T |
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| Q |
118 |
gaagt |
122 |
Q |
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||||| |
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| T |
44871753 |
gaagt |
44871757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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