View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20567_high_6 (Length: 238)
Name: NF20567_high_6
Description: NF20567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20567_high_6 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 44 - 221
Target Start/End: Original strand, 4566998 - 4567176
Alignment:
| Q |
44 |
aaatctcaaatatacttgtcgaggataagaaactttaggccctataatcttaa-atataatatgataacataatacctaatcaacctaatctgtgaagac |
142 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4566998 |
aaatctcaattatacttgtcgaggataagaaactttaggccataggatcttaacatataatatgataacataatacctaatcaacctaatctgtgaagac |
4567097 |
T |
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| Q |
143 |
atgaaatattaatcaaaataagttgtaggtccattagttacgtcaggtgcatgtgaaactttccagatataaagatgat |
221 |
Q |
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| T |
4567098 |
atgaaatattaatcaaaataagttgtaggtccattagttacgtcaggtgcatgtgaaactttccagatataaagatgat |
4567176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 4566977 - 4566921
Alignment:
| Q |
1 |
taattcatatcattacttaaaatagaatcaatatgaggaggataaatctcaaatata |
57 |
Q |
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| T |
4566977 |
taattcatatcattacttaaaatagaatcaatatgaagaggataaatctcaaatata |
4566921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 33583039 - 33582982
Alignment:
| Q |
1 |
taattcatatcattacttaaaatagaatcaatatgaggaggataaatctcaaatatac |
58 |
Q |
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| T |
33583039 |
taattcatatcattatttaaaatagaatcaatacaagcaggacaaatctcaaatatac |
33582982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 40727315 - 40727261
Alignment:
| Q |
1 |
taattcatatcattacttaaaatagaatcaatatgaggaggataaatctcaaata |
55 |
Q |
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| T |
40727315 |
taatttatatcattaattaaaatagcattaatataaggaggacaaatctcaaata |
40727261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 13471 - 13419
Alignment:
| Q |
1 |
taattcatatcattacttaaaatagaatcaatatgaggaggataaatctcaaa |
53 |
Q |
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|||||||||||||||||||||||| | |||||| ||||||| |||||||||| |
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| T |
13471 |
taattcatatcattacttaaaatatagtcaatacaaggaggacaaatctcaaa |
13419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 49525029 - 49525081
Alignment:
| Q |
1 |
taattcatatcattacttaaaatagaatcaatatgaggaggataaatctcaaa |
53 |
Q |
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|||| ||||||||||||||||||||| |||||| ||||||| |||||||||| |
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| T |
49525029 |
taatgcatatcattacttaaaatagagtcaatacaaggaggacaaatctcaaa |
49525081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 44655124 - 44655092
Alignment:
| Q |
1 |
taattcatatcattacttaaaatagaatcaata |
33 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
44655124 |
taattcatatcattacttaaaatagagtcaata |
44655092 |
T |
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