View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20567_low_10 (Length: 227)
Name: NF20567_low_10
Description: NF20567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20567_low_10 |
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| [»] chr7 (3 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 41658890 - 41658664
Alignment:
| Q |
1 |
ctcggagcaatcaatacccgtcattgatttcacaaactgggaagacatacaagtccaagattccatttttagtgctgcaactaaatggggtttcttccaa |
100 |
Q |
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| T |
41658890 |
ctcggagcaatcaatacccatcattgatttcacaaactgggaagacatacaagtccaagattccatttttagtgctgcaactaaatggggtttcttccaa |
41658791 |
T |
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| Q |
101 |
attgtgaatcatgggatacccattaatgtcatcgatgatctgaaagcttctgtccactagttctttgaattaccagttgaggagaagaaatctttgaaag |
200 |
Q |
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| T |
41658790 |
attgtgaatcatgggatacccattaatgccgtcgatgatctgaaagcttctgtccacaagttctttgaattaccagttgaggagaagaaatctttgaaag |
41658691 |
T |
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| Q |
201 |
agaattcaccacctgatgttgtgaggt |
227 |
Q |
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| T |
41658690 |
agaattcaccacctgatgttgtgaggt |
41658664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 13845779 - 13845711
Alignment:
| Q |
85 |
atggggtttcttccaaattgtgaatcatgggatacccattaatgtcatcgatgatctgaaagcttctgt |
153 |
Q |
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| T |
13845779 |
atggggtttcttccaaattgtgaatcatgggatgcctattaatgttcttgatgatctcaaagcttctgt |
13845711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 13845824 - 13845792
Alignment:
| Q |
10 |
atcaatacccgtcattgatttcacaaactggga |
42 |
Q |
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| T |
13845824 |
atcaatacccatcattgatttcacaaactggga |
13845792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 14630209 - 14629990
Alignment:
| Q |
8 |
caatcaatacccgtcattgatttcacaaactgggaagacatacaagtccaagattccatttttagtgctgcaactaaatggggtttcttccaaattgtga |
107 |
Q |
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| T |
14630209 |
caatcaatacccatcattgatttcacaaactgggatgacccagatgttcaagattcaatttttagtgctgcaactaatttgggtttcttccaaattgtga |
14630110 |
T |
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| Q |
108 |
atcatgggatacccattaatgtcatcgatgatctgaaagcttctgtccactagttctttgaattaccagttgaggagaagaaatctttgaaagagaattc |
207 |
Q |
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| T |
14630109 |
atcatggtatacccattaacgtccttgatgatttgaaagcttctgtccacaagttctttgaattaccagttgaagagaagaaatctgtgaaagagaattc |
14630010 |
T |
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| Q |
208 |
accacctgatgttgtgaggt |
227 |
Q |
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| T |
14630009 |
acctcctgaagttgtgaggt |
14629990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 14645274 - 14645058
Alignment:
| Q |
8 |
caatcaatacccgtcattgatttcacaaactgggaagacatacaagtccaagattccatttttagtgctgcaactaaatggggtttcttccaaattgtga |
107 |
Q |
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|||||||||||| |||||||||||||||||||||| ||| | | || |||||||| |||||||||||||||||||| | |||||||||||||||||||| |
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| T |
14645274 |
caatcaatacccatcattgatttcacaaactgggatgacccagatgttcaagattcaatttttagtgctgcaactaagttgggtttcttccaaattgtga |
14645175 |
T |
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| Q |
108 |
atcatgggatacccattaatgtcatcgatgatctgaaagcttctgtccactagttctttgaattaccagttgaggagaagaaatctttgaaagagaattc |
207 |
Q |
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| T |
14645174 |
atcatggtatacccattaacgtccttgatgatttgaaagcttctgtccacaagttctttgaattaccagttgaagagaagaaatctgtgaaag---attc |
14645078 |
T |
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| Q |
208 |
accacctgatgttgtgaggt |
227 |
Q |
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| T |
14645077 |
accacctgaagttgtgaggt |
14645058 |
T |
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