View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20567_low_8 (Length: 238)
Name: NF20567_low_8
Description: NF20567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20567_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 28251199 - 28250979
Alignment:
| Q |
1 |
aactgatgttatagttgaagttggagaagctcgtttctgcctccacaaggtatcagnnnnnnngacccatgtgaattatattgttcatagattaatttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28251199 |
aactgatgttatagttgaagttggagaagctcgtttctgcctccacaaggtatcagaataaaagacccatgtgaattatattgttcatagattaatttgt |
28251100 |
T |
|
| Q |
101 |
ttacttgcaccgcttgtgatcgaaggtttgtctagtgttcgacatgtgttagtgtccaacatcaataagtgtgattacatgtgtcggtattagaatcgtg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28251099 |
ttacttgcaccgcttgtgatcgaaggtttgtctagtgttcgacatgtgttagtgtccaacatcaataagtgtgattacatgtgtcggtattagaatcgtg |
28251000 |
T |
|
| Q |
201 |
tttgtgtttgatagcttgttt |
221 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
28250999 |
tttgtgtttgatagcttgttt |
28250979 |
T |
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