View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20567_low_9 (Length: 238)
Name: NF20567_low_9
Description: NF20567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20567_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 41658285 - 41658064
Alignment:
| Q |
1 |
ttgtcctgaacctgaactagtatcaggagtaagtcctcattctgatataacatcaatcactgtccttctacaagatgatattggtggactttatgtacga |
100 |
Q |
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| T |
41658285 |
ttgtcctgcacctgaactagtatcaggagtaagtcctcattctgatataacatcaatcactgtccttctacaagatgatattggtggactttatgtaaga |
41658186 |
T |
|
| Q |
101 |
gacaaagatagtgatggttggatcaatgttcctcctgttaatggagcattggtagttaacattggggatgtgctccagataatgagcaatgaatgttaca |
200 |
Q |
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| T |
41658185 |
ggcaaagatagtgatggttggatcaatgttcctcctgttaatggagcattggtagttaacattggggatgtgctccagataatgagcaatgaatgttaca |
41658086 |
T |
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| Q |
201 |
aaagtatagaacatagagtggt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
41658085 |
aaagtatagaacatagagtggt |
41658064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 14628588 - 14628367
Alignment:
| Q |
1 |
ttgtcctgaacctgaactagtatcaggagtaagtcctcattctgatataacatcaatcactgtccttctacaagatgatattggtggactttatgtacga |
100 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
14628588 |
ttgtcctgaacctgaacttgtatcaggagtaggtcctcattctgatatatcatcaatcactgtccttctacaagatgatattggcggactttatgtaaga |
14628489 |
T |
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| Q |
101 |
gacaaagatagtgatggttggatcaatgttcctcctgttaatggagcattggtagttaacattggggatgtgctccagataatgagcaatgaatgttaca |
200 |
Q |
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| T |
14628488 |
ggcaaagacggcgatagttggataaatgttcctcctgttaatggagcgttggtgatcaacattggggatgtgctacagataatgagcaatggaaggtaca |
14628389 |
T |
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| Q |
201 |
aaagtatagaacatagagtggt |
222 |
Q |
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|||||||||| ||||||||||| |
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| T |
14628388 |
aaagtatagagcatagagtggt |
14628367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 14644393 - 14644172
Alignment:
| Q |
1 |
ttgtcctgaacctgaactagtatcaggagtaagtcctcattctgatataacatcaatcactgtccttctacaagatgatattggtggactttatgtacga |
100 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||| || || |
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| T |
14644393 |
ttgtcctgaacctgaacttgtatcaggagtaggtcctcattctgatatatcatcaatcactgtccttctacaagatgataaaagaggactttatataaga |
14644294 |
T |
|
| Q |
101 |
gacaaagatagtgatggttggatcaatgttcctcctgttaatggagcattggtagttaacattggggatgtgctccagataatgagcaatgaatgttaca |
200 |
Q |
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| |||||| | ||| ||||||| ||||||||||||||||||||||| ||||| | ||||||||||||||||| |||||||||||||||| | | |||| |
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| T |
14644293 |
ggcaaagaaggagatagttggataaatgttcctcctgttaatggagcgttggtgatcaacattggggatgtgctacagataatgagcaatggaaggtaca |
14644194 |
T |
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| Q |
201 |
aaagtatagaacatagagtggt |
222 |
Q |
| |
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|||||||||| ||||||||||| |
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| T |
14644193 |
aaagtatagagcatagagtggt |
14644172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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