View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20568_high_12 (Length: 312)
Name: NF20568_high_12
Description: NF20568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20568_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 36676803 - 36677082
Alignment:
| Q |
16 |
ccaatggcattgtccacagcaaaacaatcggttgcgtcacgcagttcttccaaccatattgttgaatttagtctctccattagtatagagatctgtggat |
115 |
Q |
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| T |
36676803 |
ccaatggcattgtccacagcaaaacaatcggttgcgtcacgcagttcttccaaccatattgttgaatttagtctctccattagtatagagatctgtggat |
36676902 |
T |
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| Q |
116 |
gcatgtgtaattgttttttacaacagacaatatatactgatttacctnnnnnnncaattcaaaacaagaagtgtttaaaaagatagaactatttaaagaa |
215 |
Q |
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| T |
36676903 |
gcatgtgtaattgttttttacaacagacaatatatactgatttacctaaaaaaacaattcaaaacaagaagtgtttaaaaagatagaactatttaaagaa |
36677002 |
T |
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| Q |
216 |
gagaatgagtacctctttggtttctttgtgtacaatccacgaatgtaacaattggtgcatctgatcagctaccatctgtg |
295 |
Q |
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| T |
36677003 |
cagaatgagtacctctttggtttctttgtgtacaatccacgaatgtaacaattggtgcatctgatcagctaccatctgtg |
36677082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 36674048 - 36674151
Alignment:
| Q |
16 |
ccaatggcattgtccacagcaaaacaatcggttgcgtcacgcagttcttccaaccatattgttgaatttagtctctccattagtatagagatctgtggat |
115 |
Q |
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| T |
36674048 |
ccaatggcattgtcgacagcgaaacaatcagttgcgtcacacagttcatccaaccatattgttaaagtcagtctctccattagtatagtgatctgtgaat |
36674147 |
T |
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| Q |
116 |
gcat |
119 |
Q |
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|||| |
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| T |
36674148 |
gcat |
36674151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 36684476 - 36684541
Alignment:
| Q |
16 |
ccaatggcattgtccacagcaaaacaatcggttgcgtcacgcagttcttccaaccatattgttgaa |
81 |
Q |
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|||||||| ||||| | ||||||||| ||||||| ||| || |||||||| ||||||||||||||| |
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| T |
36684476 |
ccaatggcgttgtctatagcaaaacagtcggttgtgtcccggagttcttctaaccatattgttgaa |
36684541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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