View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20568_high_15 (Length: 266)

Name: NF20568_high_15
Description: NF20568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20568_high_15
NF20568_high_15
[»] scaffold0015 (2 HSPs)
scaffold0015 (67-259)||(32045-32237)
scaffold0015 (63-259)||(40093-40289)
[»] chr7 (1 HSPs)
chr7 (65-258)||(1420888-1421079)
[»] chr1 (15 HSPs)
chr1 (157-258)||(24233226-24233326)
chr1 (79-235)||(24227410-24227563)
chr1 (135-234)||(25610756-25610855)
chr1 (123-243)||(45692670-45692782)
chr1 (133-237)||(24513224-24513331)
chr1 (128-188)||(24233158-24233218)
chr1 (123-258)||(24626538-24626676)
chr1 (126-179)||(24242629-24242682)
chr1 (133-229)||(23895928-23896024)
chr1 (137-244)||(24634585-24634695)
chr1 (133-242)||(24221772-24221881)
chr1 (188-237)||(24629018-24629067)
chr1 (138-244)||(24804853-24804959)
chr1 (133-178)||(23898455-23898500)
chr1 (135-244)||(25869046-25869155)
[»] chr4 (1 HSPs)
chr4 (135-237)||(11033105-11033210)
[»] chr8 (1 HSPs)
chr8 (79-235)||(23772865-23773018)
[»] chr5 (1 HSPs)
chr5 (145-244)||(3181878-3181977)


Alignment Details
Target: scaffold0015 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 67 - 259
Target Start/End: Original strand, 32045 - 32237
Alignment:
Q  67 aaaagttagattgaatctcatactcaagtgataaaggacaaaatctacatcctaacaatattatagtcaaggtgatatcaaactttccacgtagactttt 166  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32045 aaaagttagattgaatctcatactcaagtgataaaggacaacatctacatcctaataatattatagtcaaggtgatatcaaactttccacgtagactttt 32144  T
Q  167 gattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaacccaattcaatctacgatcctctctg 259  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32145 gattctacccaattcaagtcttgaatcttcaaactctttacagtatcatttttggaatcgtaaacaacccaattcaatctacgatcctctctg 32237  T

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Target: scaffold0015; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 63 - 259
Target Start/End: Original strand, 40093 - 40289
Alignment:
Q  63 aaataaaagttagattgaatctcatactcaagtgataaaggacaaaatctacatcctaacaatattatagtcaaggtgatatcaaactttccacgtagac 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  40093 aaataaaagttagattgaatctcatactcaagtgataaaggacaacatctacatcctaataatattatagtcaaggtgatatcaaacttaccacgtagac 40192  T
Q  163 ttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaacccaattcaatctacgatcctctctg 259  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40193 ttttgattctacccaattcaagtcttgaatcttcaaactctttacagtatcatttttggaatcgtaaacaacccaattcaatctacggtcctctctg 40289  T

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Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 65 - 258
Target Start/End: Original strand, 1420888 - 1421079
Alignment:
Q  65 ataaaagttag-attgaatctcatactcaagtgataaaggacaaaatctacatcctaacaatattatagtcaaggtgatatcaaactttccacgtagact 163  Q
    ||||||||||| | |||||||||| ||||||||||  || |||  |||||||||||||   ||||||| ||||||||||||||||||||| || ||||||    
T  1420888 ataaaagttaggaatgaatctcattctcaagtgatgtagcacatcatctacatcctaa---tattataatcaaggtgatatcaaactttcaacatagact 1420984  T
Q  164 tttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaacccaattcaatctacgatcctctct 258  Q
    | ||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||| ||||||  ||| |||||| |||||||||||||    
T  1420985 tctgattctacccaactcaagtcttgaatcttcaaattctttatagtatcattttttgaatcataaacagtccacttcaatttacgatcctctct 1421079  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 157 - 258
Target Start/End: Original strand, 24233226 - 24233326
Alignment:
Q  157 gtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaacccaattcaatctacgatcctct 256  Q
    ||||||| ||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||||| |||||||||||||||| || |||||||||||||||    
T  24233226 gtagactcttggttctacccaattcaagtcttgaatcttcaaacacttaatagtatca-ttttgcaatcgtaaacaacccactttaatctacgatcctct 24233324  T
Q  257 ct 258  Q
    ||    
T  24233325 ct 24233326  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 235
Target Start/End: Original strand, 24227410 - 24227563
Alignment:
Q  79 gaatctcatactcaagtgataaaggacaaaatctacatcctaacaatattatagtcaaggtgatatcaaactttccacgtagacttttgattctacccaa 178  Q
    ||||||||||||||||||| | || |||  |||||||||||||   |||||||  || ||||||||||||||||||||||||||   ||||| || | ||    
T  24227410 gaatctcatactcaagtgacatagcacaccatctacatcctaa---tattataaacagggtgatatcaaactttccacgtagaccgctgattttatcaaa 24227506  T
Q  179 ttcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaacc 235  Q
    | |||| ||||||||||| |||||||||| | |||||||||  ||||||||| ||||    
T  24227507 tccaagacttgaatcttcgaactctttatggaatcatttttttaatcgtaaataacc 24227563  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 135 - 234
Target Start/End: Original strand, 25610756 - 25610855
Alignment:
Q  135 aaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaac 234  Q
    ||||| ||||||||||||| |||||||| |||||||||||| || |||| |||| ||||||  ||||||||||||||||||||||| |||| || |||||    
T  25610756 aaggttatatcaaactttcaacgtagacatttgattctaccaaactcaaatcttcaatcttggaactctttatagtatcatttttgcaatcatacacaac 25610855  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 243
Target Start/End: Original strand, 45692670 - 45692782
Alignment:
Q  123 aatattatagtcaaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttgga 222  Q
    ||||||||| | ||||||||||||||||||  | |||||||||||| ||||||||| ||||||||||       ||| |||||||| |||||||||||||    
T  45692670 aatattataattaaggtgatatcaaactttgaatgtagacttttgaatctacccaactcaagtcttg-------aaattctttata-tatcatttttgga 45692761  T
Q  223 atcgtaaacaacccaattcaa 243  Q
    ||| ||||||||||| |||||    
T  45692762 atcataaacaacccacttcaa 45692782  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 24513331 - 24513224
Alignment:
Q  133 tcaaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtc---ttgaatcttcaaactctttatagtatcatttttggaatcgtaa 229  Q
    ||||||||||||||||||||| |||||||||||||| ||||||| |  ||| ||    ||| ||||||| ||  |||||||||||||||||||||| |||    
T  24513331 tcaaggtgatatcaaactttcaacgtagacttttgactctacccgacacaaatcattctgagtcttcaatcttattatagtatcatttttggaatcataa 24513232  T
Q  230 acaaccca 237  Q
    || |||||    
T  24513231 acgaccca 24513224  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 24233158 - 24233218
Alignment:
Q  128 tatagtcaaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtctt 188  Q
    |||| ||||||||||||||||||||| ||||||||||||||||| ||||||  ||||||||    
T  24233158 tataatcaaggtgatatcaaactttcaacgtagacttttgattcaacccaacccaagtctt 24233218  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 258
Target Start/End: Original strand, 24626538 - 24626676
Alignment:
Q  123 aatattatagtcaaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttg---aatcttcaaactctttatagtatcattttt 219  Q
    ||||||||  |||||||||||| || ||||| || || |||| |||||||||||  ||||||||||    |||||| ||||||||| | ||||||||  |    
T  24626538 aatattatcatcaaggtgatattaagctttcaacatatacttctgattctacccgtttcaagtcttctttaatctttaaactctttgtggtatcattcat 24626637  T
Q  220 ggaatcgtaaacaacccaattcaatctacgatcctctct 258  Q
    ||||||||||| |||||| |||||| || | ||||||||    
T  24626638 ggaatcgtaaaaaacccacttcaatgtatggtcctctct 24626676  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 24242629 - 24242682
Alignment:
Q  126 attatagtcaaggtgatatcaaactttccacgtagacttttgattctacccaat 179  Q
    |||||| ||||||||||||||||||||| ||||||| |||||||| ||||||||    
T  24242629 attataatcaaggtgatatcaaactttcaacgtagatttttgattgtacccaat 24242682  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 23895928 - 23896024
Alignment:
Q  133 tcaaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaa 229  Q
    |||||| |||||||||||||| || |||||  | ||||||||  || || ||||||| ||||| ||  |||||||||||||||||||||||| ||||    
T  23895928 tcaaggagatatcaaactttcaacatagacagtggattctacagaactccagtcttgcatcttgaatttctttatagtatcatttttggaattgtaa 23896024  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 244
Target Start/End: Original strand, 24634585 - 24634695
Alignment:
Q  137 ggtgatatcaaactttccacgtagacttttgattctacccaattcaagtctt---gaatcttcaaactctttatagtatcatttttggaatcgtaaacaa 233  Q
    ||||||||||||||||| |||||||||||||| |||| |  |  |||||  |   || ||||||||||  |||||||||||||||||||||| ||||| |    
T  24634585 ggtgatatcaaactttcaacgtagacttttgactctatctgacacaagttgttctgagtcttcaaactgattatagtatcatttttggaatcataaacga 24634684  T
Q  234 cccaattcaat 244  Q
    |||| ||||||    
T  24634685 cccacttcaat 24634695  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 242
Target Start/End: Original strand, 24221772 - 24221881
Alignment:
Q  133 tcaaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaaca 232  Q
    ||||||||||| |||||| || | ||||||  |||| ||||||||| | |||||||| ||||| | | |||||||||||  ||||||| |||| |||||     
T  24221772 tcaaggtgataccaaactctcaatgtagaccattgagtctacccaactgaagtcttggatcttgatagtctttatagtactatttttgcaatcataaacg 24221871  T
Q  233 acccaattca 242  Q
    ||||| ||||    
T  24221872 acccacttca 24221881  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 24629018 - 24629067
Alignment:
Q  188 tgaatcttcaaactctttatagtatcatttttggaatcgtaaacaaccca 237  Q
    |||||||| |||||||||||||||| |||||| |||||| ||||||||||    
T  24629018 tgaatcttgaaactctttatagtataatttttagaatcgcaaacaaccca 24629067  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 24804853 - 24804959
Alignment:
Q  138 gtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaaccca 237  Q
    |||||| |||||| || || || |||||||| |||||| || || |||||||| |||| | | || ||  |||||||||||||||||| |||||| ||||    
T  24804853 gtgataccaaactctcaacataaacttttgaatctaccaaactccagtcttgagtcttgatattccttgaagtatcatttttggaatcataaacagccca 24804952  T
Q  238 attcaat 244  Q
     ||||||    
T  24804953 tttcaat 24804959  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 23898455 - 23898500
Alignment:
Q  133 tcaaggtgatatcaaactttccacgtagacttttgattctacccaa 178  Q
    |||||||||||||||||| || |||||||||||||| | |||||||    
T  23898455 tcaaggtgatatcaaactctcaacgtagacttttgaatttacccaa 23898500  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 244
Target Start/End: Original strand, 25869046 - 25869155
Alignment:
Q  135 aaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaac 234  Q
    ||||||||| |||||| || |||||||  ||||| ||||||||| | ||||||| |||||| | | || || |||| | || ||||  ||||||||||||    
T  25869046 aaggtgataccaaactctcaacgtagagctttgagtctacccaactgaagtcttcaatcttgatagtccttgtagtgtgatatttgcgatcgtaaacaac 25869145  T
Q  235 ccaattcaat 244  Q
    ||| ||||||    
T  25869146 ccacttcaat 25869155  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 11033210 - 11033105
Alignment:
Q  135 aaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtct---tgaatcttcaaactctttatagtatcatttttggaatcgtaaac 231  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||   ||||||   |||||||| |||||||||||||||| |||||| |||||| ||||    
T  11033210 aaggtgatatcaaactttcaacgtagacttttgattctaaccaaccaaagtctttctgaatcttgaaactctttatagtataatttttagaatcgcaaac 11033111  T
Q  232 aaccca 237  Q
    ||||||    
T  11033110 aaccca 11033105  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 235
Target Start/End: Complemental strand, 23773018 - 23772865
Alignment:
Q  79 gaatctcatactcaagtgataaaggacaaaatctacatcctaacaatattatagtcaaggtgatatcaaactttccacgtagacttttgattctacccaa 178  Q
    ||||||||||||||||||| | || |||  |||||||||||||   |||||||  || ||||||||||||||||||||||||||   ||||| || | ||    
T  23773018 gaatctcatactcaagtgacatagcacaccatctacatcctaa---tattataaacagggtgatatcaaactttccacgtagaccgctgattttatcaaa 23772922  T
Q  179 ttcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaacc 235  Q
    | |||| ||||||||||| |||||||||| | |||||||||  ||||||||| ||||    
T  23772921 tccaagacttgaatcttcgaactctttatggaatcatttttttaatcgtaaataacc 23772865  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 3181977 - 3181878
Alignment:
Q  145 caaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaacccaattcaat 244  Q
    |||||| || |||||||||||||||||||||||| | ||||||||| ||||   ||||||||||  | |||||| |||||||||||||||||| ||||||    
T  3181977 caaactctcaacgtagacttttgattctacccaactaaagtcttgactcttggcactctttataaaaccattttcggaatcgtaaacaacccacttcaat 3181878  T

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