View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20568_high_18 (Length: 251)
Name: NF20568_high_18
Description: NF20568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20568_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 2 - 234
Target Start/End: Complemental strand, 31640314 - 31640082
Alignment:
| Q |
2 |
gaagtgtaaaaatcaaatgaatatatgactttaaaattgattatttgataaatatattttaatttgtgtatgctattaatgtaagaagttttacattatc |
101 |
Q |
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| T |
31640314 |
gaagtgtaaaaatcaaatgaatatgtgactttaaaattgattatttgataaatatattttaatttgtgtatactattaatgtaagaagttttacattatc |
31640215 |
T |
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| Q |
102 |
ggaaaccacaatcaatcaaataaatgattttaaaataattatggataaagtcaaacattttaataacacgaagattgtgatcgtttaatagtgtaaaatg |
201 |
Q |
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| T |
31640214 |
ggaaaccgcaatcaatcaaataaatgattttaaaacaattatggataaagtcaaacattttaataacacgaagattgtgatcgtttaatagtgtaaaatg |
31640115 |
T |
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| Q |
202 |
tattgattgtgtaaaattttacacggatagtgt |
234 |
Q |
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| T |
31640114 |
tattgattgtgtaaaattttacacggatagtgt |
31640082 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 35044145 - 35044222
Alignment:
| Q |
87 |
aagttttacattatcgg-aaaccacaatcaatcaaataaatgattttaaaa-taattatggataaagtcaaacatttt |
162 |
Q |
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|||||||||||| ||| ||| ||||| ||||||||| ||||| ||||||| ||||||| ||||||||||||||||| |
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| T |
35044145 |
aagttttacattgtcgtcaaatcacaaccaatcaaatgaatgactttaaaagtaattattaataaagtcaaacatttt |
35044222 |
T |
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