View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20568_high_19 (Length: 240)

Name: NF20568_high_19
Description: NF20568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20568_high_19
NF20568_high_19
[»] chr6 (12 HSPs)
chr6 (18-233)||(14025601-14025816)
chr6 (18-233)||(14110796-14111011)
chr6 (18-228)||(13932673-13932883)
chr6 (18-231)||(13892534-13892747)
chr6 (18-232)||(13874830-13875044)
chr6 (18-233)||(14015470-14015687)
chr6 (18-189)||(14047694-14047865)
chr6 (80-233)||(13912143-13912296)
chr6 (18-189)||(13472527-13472698)
chr6 (18-189)||(13862360-13862531)
chr6 (18-229)||(14084991-14085202)
chr6 (18-78)||(13928814-13928874)


Alignment Details
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 14025816 - 14025601
Alignment:
Q  18 cagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  14025816 cagataatgttccagagtggttttgggctaaactatcatcacaatggtgcaacaacatcaacatttcaaacaataatctcaaaggattaattccaaatct 14025717  T
Q  118 tcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctccaaggtcccatggttattgatctgtcc 217  Q
    |||||| ||||||| ||||        |||||||||||||||||| |||||||| || ||||||||||||||  ||||| | |  |||| |||| |||||    
T  14025716 tcaagtcaaaaatcgttgttctgttttatctctttcatcaaatgaatttgaagggcctattccaccatttctaaaaggttctacagttactgatttgtcc 14025617  T
Q  218 aaaaacaaattctctg 233  Q
    ||||||||||||||||    
T  14025616 aaaaacaaattctctg 14025601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 14111011 - 14110796
Alignment:
Q  18 cagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatct 117  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||  | |||||||||||||||||||||||||||||||  ||||||||||||    
T  14111011 cagataatgttccggagtggttttgggctaaactatcatcacaaaagtgcaggagcatcaacgtttcaaacaataatctcaaaggaataattccaaatct 14110912  T
Q  118 tcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctccaagg-tcccatggttattgatctgtc 216  Q
    ||||||||||||| ||||         ||||||||||| |||||| |||||||| ||||||||||||||||| ||||| |||||| |||||||| |||||    
T  14110911 tcaagtaaaaaattattgctctagtttatctctttcattaaatgaatttgaagggcccattccaccatttctacaaggttcccat-gttattgacctgtc 14110813  T
Q  217 caaaaacaaattctctg 233  Q
    ||||||||| |||||||    
T  14110812 caaaaacaagttctctg 14110796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 13932883 - 13932673
Alignment:
Q  18 cagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||  |||||||||||||||||||||| ||||||||||||||    
T  13932883 cagataatgttccagagtggttttgggctaaactatcatcacaagaatgcaacagcatcaatatttcaaacaataatctcaaaggttcaattccaaatct 13932784  T
Q  118 tcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctccaaggtcccatggttattgatctgtcc 217  Q
    |||||| |||||||| |||        |||||||||||||||||| |||||||| || |||||| ||||| | |||||| |     |||||||| |||||    
T  13932783 tcaagtcaaaaatcactgttctcttttatctctttcatcaaatgaatttgaagggcctattccagcatttttacaaggttctgcacttattgatttgtcc 13932684  T
Q  218 aaaaacaaatt 228  Q
    |||||||||||    
T  13932683 aaaaacaaatt 13932673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 13892534 - 13892747
Alignment:
Q  18 cagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatct 117  Q
    |||||||||||||||||||||||||||||||| |||||| | |||||||||  | ||||||| |||||||||||||||||||||||| ||||||||||||    
T  13892534 cagataatgttccagagtggttttgggctaaattatcattaaaagagtgcagaagcatcaacatttcaaacaataatctcaaaggattaattccaaatct 13892633  T
Q  118 tcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctccaaggtcccatggttattgatctgtcc 217  Q
    |||||| |||||| |||||        |||||||||||||||||| |||||||| || ||||||||||||||  ||||| | |   |||||||  |||||    
T  13892634 tcaagtcaaaaattattgttctattttatctctttcatcaaatgaatttgaagggcctattccaccatttctaaaaggttctacacttattgacttgtcc 13892733  T
Q  218 aaaaacaaattctc 231  Q
    ||||||||||||||    
T  13892734 aaaaacaaattctc 13892747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 13874830 - 13875044
Alignment:
Q  18 cagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatct 117  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| |  |||||| ||||| |||| ||||||||||||| |||||| |||||    
T  13874830 cagataatgttcccgagtggttttgggctaaactatcatcacaagagtgcaagacaatcaacatttcatacaacaatctcaaaggattaattccgaatct 13874929  T
Q  118 tcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctccaaggtcccatggttattgatctgtcc 217  Q
    ||| |||||||||||||||        ||||||| |||||||| | ||||||||  |||||||||||||||||  |||| |  |   ||||||| |||||    
T  13874930 tcatgtaaaaaatcattgttcttttttatctcttgcatcaaatcaatttgaaggctccattccaccatttctcagaggttctgtatctattgatttgtcc 13875029  T
Q  218 aaaaacaaattctct 232  Q
    |||||||||||||||    
T  13875030 aaaaacaaattctct 13875044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 14015687 - 14015470
Alignment:
Q  18 cagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatct 117  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||  ||||||| |||||||||||||||||||||| ||||||||||||||    
T  14015687 cagataatattccagagtggttttgggctaaactatcatcacaagagtgctaccgcatcaacatttcaaacaataatctcaaaggttcaattccaaatct 14015588  T
Q  118 tcaagtaaaaaatca--ttgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctccaaggtcccatggttattgatctgt 215  Q
    |||||| |||| | |  || |        |||||||||||||||||| |||||||| || |||||| ||||||| |||||| |     |||||||| |||    
T  14015587 tcaagtcaaaattaattttttttttttatatctctttcatcaaatgaatttgaagggcctattccagcatttctacaaggttctgaacttattgatttgt 14015488  T
Q  216 ccaaaaacaaattctctg 233  Q
    ||||||||||||||||||    
T  14015487 ccaaaaacaaattctctg 14015470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 14047865 - 14047694
Alignment:
Q  18 cagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatct 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| ||| |||||||||||||||||||| ||||||||||||    
T  14047865 cagataatgttccagagtggttttgggctaaactatcatcaccagagtgcagcaacatgaacattttaaacaataatctcaaaggattaattccaaatct 14047766  T
Q  118 tcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttct 189  Q
    |||||  |||| ||| |||        |||||||||||||||||| ||||||||  ||| |||||| |||||    
T  14047765 tcaagccaaaagtcaatgttcttttttatctctttcatcaaatgaatttgaagggtccactccaccttttct 14047694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 13912296 - 13912143
Alignment:
Q  80 gtttcaaacaataatctcaaaggatcaattccaaatcttcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattc 179  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||        ||| |||||||||||||| |||||||| |||||||    
T  13912296 gtttcaaacaataatctcaaaggcttaattccaaatcttcaagtaaaaaatctttgttctgttttatcactttcatcaaatgaatttgaagggcccattc 13912197  T
Q  180 caccatttctccaaggtcccatggttattgatctgtccaaaaacaaattctctg 233  Q
    ||||||||||| ||||| | |  ||||||||| ||||||||||||| |||||||    
T  13912196 caccatttctcaaaggttctacagttattgatttgtccaaaaacaagttctctg 13912143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 13472527 - 13472698
Alignment:
Q  18 cagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatct 117  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||| |||   |  |||||| ||||  | || ||||||||||||| ||||||||||||    
T  13472527 cagataatgttccagagtggttttggtctaaactatcatcccaagactgctctagaatcaacatttcctataacaatctcaaaggattaattccaaatct 13472626  T
Q  118 tcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttct 189  Q
    |||||||||||||||||||        || ||||||||||||||| ||||||||  ||||||||||||||||    
T  13472627 tcaagtaaaaaatcattgttcttttttatatctttcatcaaatgaatttgaagggtccattccaccatttct 13472698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 13862360 - 13862531
Alignment:
Q  18 cagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatct 117  Q
    ||||||||||||| ||||||||||||| ||| |||||||  |||  |||||| |  || ||| |||||||||||||||| |||||||||||||||||| |    
T  13862360 cagataatgttcctgagtggttttgggataatctatcattgcaaatgtgcaatacaataaacatttcaaacaataatcttaaaggatcaattccaaattt 13862459  T
Q  118 tcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttct 189  Q
      ||||||||||||| |||        |||||||||||||||||| |||||||| |||||||||||||||||    
T  13862460 aaaagtaaaaaatcactgttctcttttatctctttcatcaaatgattttgaagggcccattccaccatttct 13862531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 14085202 - 14084991
Alignment:
Q  18 cagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatct 117  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||  |  |||||| ||||  |||| ||| |||||||||||||||| |||||    
T  14085202 cagataatattccagagtggttttgggcaaaactatcatcacaagagtgcaggacaatcaacctttcttacaacaatttcaaaggatcaattccgaatct 14085103  T
Q  118 tcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctccaaggtcccatggttattgatctgtcc 217  Q
     ||  ||| |||| |||||        || ||| ||||||||||| |||||||| |||||||||||||||||   |||| ||||   |||||||||||||    
T  14085102 ccacataagaaattattgttcttttttatttctgtcatcaaatgaatttgaaggtcccattccaccatttcttagaggttccataaatattgatctgtcc 14085003  T
Q  218 aaaaacaaattc 229  Q
    ||||| ||||||    
T  14085002 aaaaataaattc 14084991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 13928874 - 13928814
Alignment:
Q  18 cagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaacatcaa 78  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||    
T  13928874 cagataatgttcccgagtggttttgggctaaactatcatcacaagagtgcagcagcatcaa 13928814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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