View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20568_high_21 (Length: 226)
Name: NF20568_high_21
Description: NF20568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20568_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 28 - 211
Target Start/End: Original strand, 38832387 - 38832566
Alignment:
| Q |
28 |
gtgaacattaattgtaatagctacaaagaaaaataacgaagttgaggaccaaaataaaccctagctactaaaccttcaaaagtgctttcaaaagcctctc |
127 |
Q |
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| T |
38832387 |
gtgaacattaattgtaatagctacaaagaaaaataacgaagttgaggaccaaaataaaccctagctactaaaccttcaaaagtgctttcaaaagc----c |
38832482 |
T |
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| Q |
128 |
tccaatcgtatcctaatatacttttaaccaacacaaacttgacacgtggcaacatttatatgctttgagaaaccatttagtatg |
211 |
Q |
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| T |
38832483 |
tccaatcgtatcctaatatacttttaaccaacacaaaattgacacgtggcaacatttatatgctttgagaaaccatttagtatg |
38832566 |
T |
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