View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20568_high_22 (Length: 224)
Name: NF20568_high_22
Description: NF20568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20568_high_22 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 37757086 - 37757292
Alignment:
| Q |
18 |
aggcttactttgtaaccatattttaaaaataactacaacatactctactattgtaaccatccaatagaaaatattcactacactaaatattcatcatttc |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37757086 |
aggcttactttgtaaccatcttttaaaaataactacaacatactctactattgtaaccatccaatagaaaatattcactacactaaatattcatcatttc |
37757185 |
T |
|
| Q |
118 |
atgaaaaaataacaaattataatgcttgcgttgcaagtttaaaagttagagttaaaaaagttacaagattaaacctttgtgttcatcatcatcagcatca |
217 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37757186 |
atgaaaaaatatcaaattataatgcttgcgttgcaagtttaaaagttagagttaaaaaagttaaaagattaaacctttgtgttcatcatcatcagcatca |
37757285 |
T |
|
| Q |
218 |
tgatact |
224 |
Q |
| |
|
||||||| |
|
|
| T |
37757286 |
tgatact |
37757292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University