View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20568_high_4 (Length: 500)
Name: NF20568_high_4
Description: NF20568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20568_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 36992109 - 36992395
Alignment:
| Q |
11 |
cagagattgcataggtgtaacacgatgttcgagtgatagagaagaaaaattgaaagttaaagaagcagtagtgtggtctcctgctgaggaattggcaaag |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
36992109 |
cagaaattgcataggtgtaacacgatgttcgagtgatagagaagaaaaattgaaagttaaagaagcagtagtgtggtctcctgctgaggaattggccaag |
36992208 |
T |
|
| Q |
111 |
aaatttgagcggcggcttcttgtgggaataggttcagcttcacttgtagctttaggtgcaaattttggtggcatcactagnnnnnnncttggtttgtcac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36992209 |
aaatttgagcggcggcttcttgtgggaataggttcagcttcacttgtagctttaggtgcaaattttggtggcatcactagtttttttcttggtttgtcac |
36992308 |
T |
|
| Q |
211 |
cacagaatggtcgtaaactgaagctagatgtgctttatcccataggaggctacacacgttacattgacacaagagaggggttcggta |
297 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36992309 |
cacagaatggtcgtaaactgaagctggatgtgctttatcccataggaggctacacacgttacattgacacaagagaggggttcggta |
36992395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 349 - 482
Target Start/End: Original strand, 36992443 - 36992576
Alignment:
| Q |
349 |
aaaagcatgctagtacatacatttaattaattgttaattttggatgatttggatggtatattaaaataatcagaatttatatacccggtgaattgggttg |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36992443 |
aaaagcatgctagtacatacatttaattaattgttaatttgggatgatttggatggcatattaaaataatcagaatttatatacccggtgaattgggttg |
36992542 |
T |
|
| Q |
449 |
gagatcagacactcctgtatcgagctgctaaaag |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
36992543 |
gagatcagacactcctgtatcgagctgctaaaag |
36992576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University