View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20568_high_6 (Length: 480)
Name: NF20568_high_6
Description: NF20568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20568_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 5e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 286 - 470
Target Start/End: Original strand, 7801678 - 7801865
Alignment:
| Q |
286 |
taactgatggtgtgtcaagaatataaaatccataattcaagctagttgcaccaatcatcttctgtgtatagttgtcctgtattgaacacttaaacttatc |
385 |
Q |
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| T |
7801678 |
taactgatggtgtgtcaagaatataaaatccataattcaagctagctgcaccaatcatcttctgtgtatagttgtcctgtattgaacacttaaacttatc |
7801777 |
T |
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| Q |
386 |
aaaaattaaatggcatgaaatatttggag---ttagtttatgaataaaaatgagattgaaggaaatttaaaattaaacccttgttcat |
470 |
Q |
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| T |
7801778 |
aaaaattaaatggcatgaaatatttggagttattagtttatgaataaaaatgagattgaaggaaatttaaaattaaacccttgttcat |
7801865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 22 - 207
Target Start/End: Original strand, 7800947 - 7801126
Alignment:
| Q |
22 |
ttttctggtaaatgagcttgaaatagtagagctagctctagcaataccaataatatatttatgttttctgtctactattccattttgttgtggtgttcca |
121 |
Q |
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| T |
7800947 |
ttttttggtaaatgagcttgaaatagtagagct----ctagcaatgccaataatatatttgtgttttctctctactattccattttgttgtggtgttcca |
7801042 |
T |
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| Q |
122 |
acacaccatgtttgatgtataattccannnnnnnagagtatgaatcttttataagaagttcattaccattatctgatctaatacat |
207 |
Q |
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| T |
7801043 |
acataccaagtttgatgtataattcca--tttttagagtttaaatcttttataagaagttcattaccattatctgatctaatacat |
7801126 |
T |
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