View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20568_low_10 (Length: 348)
Name: NF20568_low_10
Description: NF20568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20568_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 7470988 - 7470654
Alignment:
| Q |
1 |
ataaaactgtctctgtttaatatttttctacatgtatttttccgcagaggtttaggtccttggggtcctgatttagtcagcaggtatacaagtgctaggt |
100 |
Q |
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| T |
7470988 |
ataaaactgtcaatgtttaatatttttctacatgtatttttccgcagaggtttaggtccttggggtcctgatttagtcagcaggtatacaagtgctaggt |
7470889 |
T |
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| Q |
101 |
ttgtcaaatactcaactggggagcttttgacagaatctgaatcgaaattactaacaggtacagagagatagctcatcgatgtgccttagttgtaagaaca |
200 |
Q |
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| T |
7470888 |
ttgtcaaatactcaactggggaacttttgacagaatctgaatcgaaattactaacaggtacagagagatagctcattgatgtgccttagttgtaagaaca |
7470789 |
T |
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| Q |
201 |
tatttctaattggtgnnnnnnncatattgaagattatgtttatcatacgttagctgccaaagctagtggtgagttgtgcttaaaatatattttttcattt |
300 |
Q |
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| T |
7470788 |
tatttctaattggtgtttttttcatattgaagattatgtttatcatacgttagctgccaaagctagtggtgagttgtgcttaaaatatattttttcattt |
7470689 |
T |
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| Q |
301 |
ggagcatttgccaagtcgcctcttctacacaggtt |
335 |
Q |
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| T |
7470688 |
ggagcatttgccaagtcgcctcttctacacaggtt |
7470654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 225 - 311
Target Start/End: Complemental strand, 52871115 - 52871029
Alignment:
| Q |
225 |
tattgaagattatgtttatcatacgttagctgccaaagctagtggtgagttgtgcttaaaatatattttttcatttggagcatttgc |
311 |
Q |
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| T |
52871115 |
tattgaagattatgtttatcatacattggcggccaaagctagtggggagctgtgtttaaaatatatttttgcatttggagcatttgc |
52871029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 52871306 - 52871247
Alignment:
| Q |
44 |
gcagaggtttaggtccttggggtcctgatttagtcagcaggtatacaagtgctaggtttg |
103 |
Q |
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| T |
52871306 |
gcagaggtttaggtccttggggtcctaacatggtccgcaaatatacaagtgctaggtttg |
52871247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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