View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20568_low_11 (Length: 327)

Name: NF20568_low_11
Description: NF20568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20568_low_11
NF20568_low_11
[»] chr7 (4 HSPs)
chr7 (11-310)||(39670077-39670371)
chr7 (97-168)||(28714744-28714814)
chr7 (132-168)||(22846475-22846511)
chr7 (132-168)||(42234731-42234767)
[»] chr8 (2 HSPs)
chr8 (97-169)||(37424209-37424280)
chr8 (132-168)||(21111358-21111394)
[»] scaffold0262 (1 HSPs)
scaffold0262 (132-168)||(21743-21779)
[»] scaffold0118 (2 HSPs)
scaffold0118 (132-168)||(22973-23009)
scaffold0118 (132-168)||(25928-25964)
[»] chr6 (1 HSPs)
chr6 (132-168)||(15336003-15336039)
[»] chr5 (1 HSPs)
chr5 (132-168)||(10027724-10027760)
[»] chr4 (1 HSPs)
chr4 (132-168)||(55556538-55556574)
[»] chr2 (2 HSPs)
chr2 (132-168)||(24261033-24261069)
chr2 (132-168)||(27512075-27512111)
[»] chr1 (1 HSPs)
chr1 (132-168)||(36209891-36209927)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 310
Target Start/End: Complemental strand, 39670371 - 39670077
Alignment:
Q  11 cagagagcatgaaagagacccacggcttacctcacatccacattacaacgaggatataaccataaagnnnnnnnnnnnnnnnnnnaataatacagtttaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||    
T  39670371 cagagagcatgaaagagacccacggcttacctcacatccacattacaacgaggatataaccataaagtttttttttttttttt--aataatacagtttaa 39670274  T
Q  111 gatttttatatattaatcttaaaagtgtttcaagtaaattcaagtgttaaaattttaaaggttaattattaataaaatggataatccatgcacaaacaaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39670273 gatttttatatattaatcttaaaagtgtttcaagtaaattcaagtgttaaaattttaaaggttaattattaataaaatggataatccatgcacaaacaaa 39670174  T
Q  211 tccattcacataagcacttagaaaattaattaatatagttctattttgataaaccatacaaattttatctataacttcccatattctggtcactatttca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  39670173 tccattcacataagcacttagaaaattaattaatatagttctattttgataaaccatacaaattttatct---acttcccatattctggtcactatttca 39670077  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 28714814 - 28714744
Alignment:
Q  97 ataatacagtttaagatttttatatattaatcttaaaagtgtttcaagtaaattcaagtgttaaaattttaa 168  Q
    |||||| ||||||| | |||||| |||||||||| || || ||||||||||||||||||||||| |||||||    
T  28714814 ataatatagtttaaaacttttatgtattaatcttgaa-gtatttcaagtaaattcaagtgttaacattttaa 28714744  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 22846475 - 22846511
Alignment:
Q  132 aaagtgtttcaagtaaattcaagtgttaaaattttaa 168  Q
    |||||||||||| |||||||||||||| |||||||||    
T  22846475 aaagtgtttcaattaaattcaagtgttcaaattttaa 22846511  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 42234731 - 42234767
Alignment:
Q  132 aaagtgtttcaagtaaattcaagtgttaaaattttaa 168  Q
    |||||||||||| |||||||||||||| |||||||||    
T  42234731 aaagtgtttcaattaaattcaagtgttcaaattttaa 42234767  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 37424209 - 37424280
Alignment:
Q  97 ataatacagtttaagatttttatatattaatcttaaaagtgtttcaagtaaattcaagtgttaaaattttaaa 169  Q
    |||||| ||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||  ||||||||    
T  37424209 ataatatagtttaagacttttatatagtaatcttaaaa-tgtttcaagtaaattcaagtgttagcattttaaa 37424280  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 21111394 - 21111358
Alignment:
Q  132 aaagtgtttcaagtaaattcaagtgttaaaattttaa 168  Q
    |||||||||||| |||||||||||||| |||||||||    
T  21111394 aaagtgtttcaattaaattcaagtgttcaaattttaa 21111358  T

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Target: scaffold0262 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 21743 - 21779
Alignment:
Q  132 aaagtgtttcaagtaaattcaagtgttaaaattttaa 168  Q
    |||||||||||| |||||||||||||| |||||||||    
T  21743 aaagtgtttcaattaaattcaagtgttcaaattttaa 21779  T

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Target: scaffold0118 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 23009 - 22973
Alignment:
Q  132 aaagtgtttcaagtaaattcaagtgttaaaattttaa 168  Q
    |||||||||||| |||||||||||||| |||||||||    
T  23009 aaagtgtttcaattaaattcaagtgttcaaattttaa 22973  T

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Target: scaffold0118; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 25964 - 25928
Alignment:
Q  132 aaagtgtttcaagtaaattcaagtgttaaaattttaa 168  Q
    |||||||||||| |||||||||||||| |||||||||    
T  25964 aaagtgtttcaattaaattcaagtgttcaaattttaa 25928  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 15336003 - 15336039
Alignment:
Q  132 aaagtgtttcaagtaaattcaagtgttaaaattttaa 168  Q
    |||||||||||| |||||||||||||| |||||||||    
T  15336003 aaagtgtttcaattaaattcaagtgttcaaattttaa 15336039  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 10027724 - 10027760
Alignment:
Q  132 aaagtgtttcaagtaaattcaagtgttaaaattttaa 168  Q
    |||||||||||| |||||||||||||| |||||||||    
T  10027724 aaagtgtttcaattaaattcaagtgttcaaattttaa 10027760  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 55556574 - 55556538
Alignment:
Q  132 aaagtgtttcaagtaaattcaagtgttaaaattttaa 168  Q
    |||||||||||| |||||||||||||| |||||||||    
T  55556574 aaagtgtttcaattaaattcaagtgttcaaattttaa 55556538  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 24261069 - 24261033
Alignment:
Q  132 aaagtgtttcaagtaaattcaagtgttaaaattttaa 168  Q
    |||||||||||| |||||||||||||| |||||||||    
T  24261069 aaagtgtttcaattaaattcaagtgttcaaattttaa 24261033  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 27512075 - 27512111
Alignment:
Q  132 aaagtgtttcaagtaaattcaagtgttaaaattttaa 168  Q
    |||||||||||| |||||||||||||| |||||||||    
T  27512075 aaagtgtttcaattaaattcaagtgttcaaattttaa 27512111  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 36209891 - 36209927
Alignment:
Q  132 aaagtgtttcaagtaaattcaagtgttaaaattttaa 168  Q
    |||||||||||| |||||||||||||| |||||||||    
T  36209891 aaagtgtttcaattaaattcaagtgttcaaattttaa 36209927  T

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