View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20568_low_2 (Length: 519)

Name: NF20568_low_2
Description: NF20568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20568_low_2
NF20568_low_2
[»] chr4 (3 HSPs)
chr4 (232-504)||(5480356-5480638)
chr4 (65-164)||(5480198-5480287)
chr4 (12-74)||(5479980-5480042)
[»] chr2 (3 HSPs)
chr2 (232-504)||(45006099-45006381)
chr2 (65-164)||(45006450-45006539)
chr2 (12-74)||(45006695-45006757)
[»] chr8 (3 HSPs)
chr8 (232-504)||(2682673-2682955)
chr8 (65-164)||(2683024-2683113)
chr8 (12-74)||(2683269-2683331)
[»] chr6 (4 HSPs)
chr6 (258-504)||(34217817-34218072)
chr6 (65-164)||(34217640-34217741)
chr6 (16-74)||(34217418-34217476)
chr6 (14-74)||(10242203-10242263)
[»] chr1 (5 HSPs)
chr1 (232-309)||(5421000-5421077)
chr1 (65-117)||(5421205-5421257)
chr1 (327-373)||(27146982-27147028)
chr1 (373-461)||(27147047-27147128)
chr1 (127-164)||(5421146-5421183)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 232 - 504
Target Start/End: Original strand, 5480356 - 5480638
Alignment:
Q  232 atgatattgaaat-gccttggagctgattatggcgaaattcacaatgtcgttgaagcgcaagaagtaactgaaaccgaagcattataaagagaggcca-- 328  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||      
T  5480356 atgatattgaaattgccttggagctgattatggcgaaattcacaatgtcgttgaagcgcaagaagtaactgaaaccaaagcattataaagagaggccaca 5480455  T
Q  329 gttagtatgaccagctatgcgagttcagatgcagctgttccacttgcaaccatgggacaattttcaatgtgagttaggctgctgaaagctatattatata 428  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||    
T  5480456 gttagtatgaccagctatgcgagttcagatgcagctgttccacttgcaaccatgggacaattttcaatgtgagttaggctgctgaaagc-----tatata 5480550  T
Q  429 ttatgtgcataaaaggcattttctgtc------------aaatttaacactgaaaatctgaaaaataaaagacttcatgcttaaaaat 504  Q
    |||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5480551 ttatgtgcataaaaggcattttctgtcaaatttgagggaaaatttaacactgaaaatctgaaaaataaaagacttcatgcttaaaaat 5480638  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 65 - 164
Target Start/End: Original strand, 5480198 - 5480287
Alignment:
Q  65 gcatggtttgttgaaatttcttttatggctcgtgttttttcctacataatcctacataatcatattattattttatgaaaactttgtttcctatgttaca 164  Q
    |||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5480198 gcatggtttgttgaaatttcttttatggctcgtgttttt----------tcctacataatcatattattattttatgaaaactttgtttcctatgttaca 5480287  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 5480042 - 5479980
Alignment:
Q  12 tctggaaaagttaattcacaacagagccaagtcgtttatagctatcaataagggcatggtttg 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5480042 tctggaaaagttaattcacaacagagccaagtcgtttatagctatcaataagggcatggtttg 5479980  T

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Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 232 - 504
Target Start/End: Complemental strand, 45006381 - 45006099
Alignment:
Q  232 atgatattgaaat-gccttggagctgattatggcgaaattcacaatgtcgttgaagcgcaagaagtaactgaaaccgaagcattataaagagaggcca-- 328  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||      
T  45006381 atgatattgaaattgccttggagctgattatggcaaaattcacaatgtcgttgaagcgcaagaagtaactgaaaccaaagcattataaagagaggccaca 45006282  T
Q  329 gttagtatgaccagctatgcgagttcagatgcagctgttccacttgcaaccatgggacaattttcaatgtgagttaggctgctgaaagctatattatata 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     |||||    
T  45006281 gttagtatgaccagctatgcgagttcagatgcagctgttccacttgcaaccatgggacaattttcaatgtgagttaggcggctgaaagct-----atata 45006187  T
Q  429 ttatgtgcataaaaggcattttctgtc------------aaatttaacactgaaaatctgaaaaataaaagacttcatgcttaaaaat 504  Q
    |||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45006186 ttatgtgcataaaaggcattttctgtcaaatttgagggaaaatttaacactgaaaatctgaaaaataaaagacttcatgcttaaaaat 45006099  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 45006539 - 45006450
Alignment:
Q  65 gcatggtttgttgaaatttcttttatggctcgtgttttttcctacataatcctacataatcatattattattttatgaaaactttgtttcctatgttaca 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||    
T  45006539 gcatggtttgttgaaatttcttttatggctcgtgttttttcctacataatc----------atattattattttatgaaaactttgtttcctatgttaca 45006450  T

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Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 45006695 - 45006757
Alignment:
Q  12 tctggaaaagttaattcacaacagagccaagtcgtttatagctatcaataagggcatggtttg 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45006695 tctggaaaagttaattcacaacagagccaagtcgtttatagctatcaataagggcatggtttg 45006757  T

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Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 232 - 504
Target Start/End: Complemental strand, 2682955 - 2682673
Alignment:
Q  232 atgatattgaaat-gccttggagctgattatggcgaaattcacaatgtcgttgaagcgcaagaagtaactgaaaccgaagcattataaagagaggcca-- 328  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||      
T  2682955 atgatattgaaattgccttggagctgattatggcaaaattcacaatgtcgttgaagcgcaagaagtaactgaaaccaaagcattataaagagaggccaca 2682856  T
Q  329 gttagtatgaccagctatgcgagttcagatgcagctgttccacttgcaaccatgggacaattttcaatgtgagttaggctgctgaaagctatattatata 428  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     |||||    
T  2682855 gttagtatgaccagctatgagagttcagatgcagctgttccacttgcaaccatgggacaattttcaatgtgagttaggcagctgaaagct-----atata 2682761  T
Q  429 ttatgtgcataaaaggcattttctgtc------------aaatttaacactgaaaatctgaaaaataaaagacttcatgcttaaaaat 504  Q
    |||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2682760 ttatgtgcataaaaggcattttctgtcaaatttgagggaaaatttaacactgaaaatctgaaaaataaaagacttcatgcttaaaaat 2682673  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 2683113 - 2683024
Alignment:
Q  65 gcatggtttgttgaaatttcttttatggctcgtgttttttcctacataatcctacataatcatattattattttatgaaaactttgtttcctatgttaca 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||    
T  2683113 gcatggtttgttgaaatttcttttatggctcgtgttttttcctacataatc----------atattattattttatgaaaactttgtttcctatgttaca 2683024  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 2683269 - 2683331
Alignment:
Q  12 tctggaaaagttaattcacaacagagccaagtcgtttatagctatcaataagggcatggtttg 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2683269 tctggaaaagttaattcacaacagagccaagtcgtttatagctatcaataagggcatggtttg 2683331  T

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Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 258 - 504
Target Start/End: Original strand, 34217817 - 34218072
Alignment:
Q  258 ttatggcgaaattcacaatgtcgttgaagcgcaagaagtaactgaaaccgaagcattataaagagaggcca--gttagtatgaccagctatgcgagttca 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||    
T  34217817 ttatggcgaaattcacaatgtcgttgaagcgcaagaagtaactgaaaccgaagcattataaagagaggccacagttagtatgaccagctatgagagttca 34217916  T
Q  356 gatgcagctgttccacttgcaaccatgggacaattttcaatgtgagttaggctgctgaaagctatattatatattatgtgcataaaaggcattttctgtc 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||    
T  34217917 gatgcagctgttccacttgcaaccatgggacaattttcaatgtgagttaggctgctgaaagc-----tatatattatgtgcataaaaggcattttctgtc 34218011  T
Q  456 ------------aaatttaacactgaaaatctgaaaaataaaagacttcatgcttaaaaat 504  Q
                |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34218012 aaatttgagggaaaatttaacactgaaaatctgaaaaataaaagacttcatgcttaaaaat 34218072  T

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Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 65 - 164
Target Start/End: Original strand, 34217640 - 34217741
Alignment:
Q  65 gcatggtttgttgaaatttcttttatggctcgtgttttttcctacataatcctacataatc--atattattattttatgaaaactttgtttcctatgtta 162  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||    
T  34217640 gcatggttttttgaaatttcttttatggctcgtgttttttcctacataatcctgcataatcatatattattattttatgaaaactttgtttcctatgtta 34217739  T
Q  163 ca 164  Q
    ||    
T  34217740 ca 34217741  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 34217476 - 34217418
Alignment:
Q  16 gaaaagttaattcacaacagagccaagtcgtttatagctatcaataagggcatggtttg 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34217476 gaaaagttaattcacaacagagccaagtcgtttatagctatcaataagggcatggtttg 34217418  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 10242263 - 10242203
Alignment:
Q  14 tggaaaagttaattcacaacagagccaagtcgtttatagctatcaataagggcatggtttg 74  Q
    |||||||||||||||||||||||  |||||| ||||||||||||||||||||||| |||||    
T  10242263 tggaaaagttaattcacaacagattcaagtcatttatagctatcaataagggcatagtttg 10242203  T

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Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 232 - 309
Target Start/End: Complemental strand, 5421077 - 5421000
Alignment:
Q  232 atgatattgaaatgccttggagctgattatggcgaaattcacaatgtcgttgaagcgcaagaagtaactgaaaccgaa 309  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  5421077 atgatattgaaatgccttggagctgattatggtgaaattcacaatgtcgctgaagcgcaagaagtaactgaaaccgaa 5421000  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 5421257 - 5421205
Alignment:
Q  65 gcatggtttgttgaaatttcttttatggctcgtgttttttcctacataatcct 117  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5421257 gcatggtttgttgaaatttcttttatggctcgtgttttttcatacataatcct 5421205  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 373
Target Start/End: Original strand, 27146982 - 27147028
Alignment:
Q  327 cagttagtatgaccagctatgcgagttcagatgcagctgttccactt 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27146982 cagttagtatgaccagctatgcgagttcagatgcagctgttccactt 27147028  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 461
Target Start/End: Original strand, 27147047 - 27147128
Alignment:
Q  373 tgcaaccatgggacaattttcaatgtgagttaggctgctgaaagctatattatatattatgtgcataaaaggcattttctgtcaaattt 461  Q
    ||||||||||||||| |||| |||||||||||| || ||||  ||||| |     ||||||||||||||||||||||||||||||||||    
T  27147047 tgcaaccatgggacagttttgaatgtgagttagactactga--gctatgt-----attatgtgcataaaaggcattttctgtcaaattt 27147128  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 5421183 - 5421146
Alignment:
Q  127 tattattattttatgaaaactttgtttcctatgttaca 164  Q
    |||||||| |||||||||||||||||||||||||||||    
T  5421183 tattattaatttatgaaaactttgtttcctatgttaca 5421146  T

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