View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20568_low_20 (Length: 240)

Name: NF20568_low_20
Description: NF20568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20568_low_20
NF20568_low_20
[»] chr6 (12 HSPs)
chr6 (18-233)||(14025601-14025816)
chr6 (18-233)||(14110796-14111011)
chr6 (18-228)||(13932673-13932883)
chr6 (18-231)||(13892534-13892747)
chr6 (18-232)||(13874830-13875044)
chr6 (18-233)||(14015470-14015687)
chr6 (18-189)||(14047694-14047865)
chr6 (80-233)||(13912143-13912296)
chr6 (18-189)||(13472527-13472698)
chr6 (18-189)||(13862360-13862531)
chr6 (18-229)||(14084991-14085202)
chr6 (18-78)||(13928814-13928874)


Alignment Details
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 14025816 - 14025601
Alignment:
Q  18 cagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  14025816 cagataatgttccagagtggttttgggctaaactatcatcacaatggtgcaacaacatcaacatttcaaacaataatctcaaaggattaattccaaatct 14025717  T
Q  118 tcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctccaaggtcccatggttattgatctgtcc 217  Q
    |||||| ||||||| ||||        |||||||||||||||||| |||||||| || ||||||||||||||  ||||| | |  |||| |||| |||||    
T  14025716 tcaagtcaaaaatcgttgttctgttttatctctttcatcaaatgaatttgaagggcctattccaccatttctaaaaggttctacagttactgatttgtcc 14025617  T
Q  218 aaaaacaaattctctg 233  Q
    ||||||||||||||||    
T  14025616 aaaaacaaattctctg 14025601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 14111011 - 14110796
Alignment:
Q  18 cagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatct 117  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||  | |||||||||||||||||||||||||||||||  ||||||||||||    
T  14111011 cagataatgttccggagtggttttgggctaaactatcatcacaaaagtgcaggagcatcaacgtttcaaacaataatctcaaaggaataattccaaatct 14110912  T
Q  118 tcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctccaagg-tcccatggttattgatctgtc 216  Q
    ||||||||||||| ||||         ||||||||||| |||||| |||||||| ||||||||||||||||| ||||| |||||| |||||||| |||||    
T  14110911 tcaagtaaaaaattattgctctagtttatctctttcattaaatgaatttgaagggcccattccaccatttctacaaggttcccat-gttattgacctgtc 14110813  T
Q  217 caaaaacaaattctctg 233  Q
    ||||||||| |||||||    
T  14110812 caaaaacaagttctctg 14110796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 13932883 - 13932673
Alignment:
Q  18 cagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||  |||||||||||||||||||||| ||||||||||||||    
T  13932883 cagataatgttccagagtggttttgggctaaactatcatcacaagaatgcaacagcatcaatatttcaaacaataatctcaaaggttcaattccaaatct 13932784  T
Q  118 tcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctccaaggtcccatggttattgatctgtcc 217  Q
    |||||| |||||||| |||        |||||||||||||||||| |||||||| || |||||| ||||| | |||||| |     |||||||| |||||    
T  13932783 tcaagtcaaaaatcactgttctcttttatctctttcatcaaatgaatttgaagggcctattccagcatttttacaaggttctgcacttattgatttgtcc 13932684  T
Q  218 aaaaacaaatt 228  Q
    |||||||||||    
T  13932683 aaaaacaaatt 13932673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 13892534 - 13892747
Alignment:
Q  18 cagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatct 117  Q
    |||||||||||||||||||||||||||||||| |||||| | |||||||||  | ||||||| |||||||||||||||||||||||| ||||||||||||    
T  13892534 cagataatgttccagagtggttttgggctaaattatcattaaaagagtgcagaagcatcaacatttcaaacaataatctcaaaggattaattccaaatct 13892633  T
Q  118 tcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctccaaggtcccatggttattgatctgtcc 217  Q
    |||||| |||||| |||||        |||||||||||||||||| |||||||| || ||||||||||||||  ||||| | |   |||||||  |||||    
T  13892634 tcaagtcaaaaattattgttctattttatctctttcatcaaatgaatttgaagggcctattccaccatttctaaaaggttctacacttattgacttgtcc 13892733  T
Q  218 aaaaacaaattctc 231  Q
    ||||||||||||||    
T  13892734 aaaaacaaattctc 13892747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 13874830 - 13875044
Alignment:
Q  18 cagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatct 117  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| |  |||||| ||||| |||| ||||||||||||| |||||| |||||    
T  13874830 cagataatgttcccgagtggttttgggctaaactatcatcacaagagtgcaagacaatcaacatttcatacaacaatctcaaaggattaattccgaatct 13874929  T
Q  118 tcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctccaaggtcccatggttattgatctgtcc 217  Q
    ||| |||||||||||||||        ||||||| |||||||| | ||||||||  |||||||||||||||||  |||| |  |   ||||||| |||||    
T  13874930 tcatgtaaaaaatcattgttcttttttatctcttgcatcaaatcaatttgaaggctccattccaccatttctcagaggttctgtatctattgatttgtcc 13875029  T
Q  218 aaaaacaaattctct 232  Q
    |||||||||||||||    
T  13875030 aaaaacaaattctct 13875044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 14015687 - 14015470
Alignment:
Q  18 cagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatct 117  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||  ||||||| |||||||||||||||||||||| ||||||||||||||    
T  14015687 cagataatattccagagtggttttgggctaaactatcatcacaagagtgctaccgcatcaacatttcaaacaataatctcaaaggttcaattccaaatct 14015588  T
Q  118 tcaagtaaaaaatca--ttgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctccaaggtcccatggttattgatctgt 215  Q
    |||||| |||| | |  || |        |||||||||||||||||| |||||||| || |||||| ||||||| |||||| |     |||||||| |||    
T  14015587 tcaagtcaaaattaattttttttttttatatctctttcatcaaatgaatttgaagggcctattccagcatttctacaaggttctgaacttattgatttgt 14015488  T
Q  216 ccaaaaacaaattctctg 233  Q
    ||||||||||||||||||    
T  14015487 ccaaaaacaaattctctg 14015470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 14047865 - 14047694
Alignment:
Q  18 cagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatct 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| ||| |||||||||||||||||||| ||||||||||||    
T  14047865 cagataatgttccagagtggttttgggctaaactatcatcaccagagtgcagcaacatgaacattttaaacaataatctcaaaggattaattccaaatct 14047766  T
Q  118 tcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttct 189  Q
    |||||  |||| ||| |||        |||||||||||||||||| ||||||||  ||| |||||| |||||    
T  14047765 tcaagccaaaagtcaatgttcttttttatctctttcatcaaatgaatttgaagggtccactccaccttttct 14047694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 13912296 - 13912143
Alignment:
Q  80 gtttcaaacaataatctcaaaggatcaattccaaatcttcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattc 179  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||        ||| |||||||||||||| |||||||| |||||||    
T  13912296 gtttcaaacaataatctcaaaggcttaattccaaatcttcaagtaaaaaatctttgttctgttttatcactttcatcaaatgaatttgaagggcccattc 13912197  T
Q  180 caccatttctccaaggtcccatggttattgatctgtccaaaaacaaattctctg 233  Q
    ||||||||||| ||||| | |  ||||||||| ||||||||||||| |||||||    
T  13912196 caccatttctcaaaggttctacagttattgatttgtccaaaaacaagttctctg 13912143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 13472527 - 13472698
Alignment:
Q  18 cagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatct 117  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||| |||   |  |||||| ||||  | || ||||||||||||| ||||||||||||    
T  13472527 cagataatgttccagagtggttttggtctaaactatcatcccaagactgctctagaatcaacatttcctataacaatctcaaaggattaattccaaatct 13472626  T
Q  118 tcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttct 189  Q
    |||||||||||||||||||        || ||||||||||||||| ||||||||  ||||||||||||||||    
T  13472627 tcaagtaaaaaatcattgttcttttttatatctttcatcaaatgaatttgaagggtccattccaccatttct 13472698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 13862360 - 13862531
Alignment:
Q  18 cagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatct 117  Q
    ||||||||||||| ||||||||||||| ||| |||||||  |||  |||||| |  || ||| |||||||||||||||| |||||||||||||||||| |    
T  13862360 cagataatgttcctgagtggttttgggataatctatcattgcaaatgtgcaatacaataaacatttcaaacaataatcttaaaggatcaattccaaattt 13862459  T
Q  118 tcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttct 189  Q
      ||||||||||||| |||        |||||||||||||||||| |||||||| |||||||||||||||||    
T  13862460 aaaagtaaaaaatcactgttctcttttatctctttcatcaaatgattttgaagggcccattccaccatttct 13862531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 14085202 - 14084991
Alignment:
Q  18 cagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatct 117  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||  |  |||||| ||||  |||| ||| |||||||||||||||| |||||    
T  14085202 cagataatattccagagtggttttgggcaaaactatcatcacaagagtgcaggacaatcaacctttcttacaacaatttcaaaggatcaattccgaatct 14085103  T
Q  118 tcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctccaaggtcccatggttattgatctgtcc 217  Q
     ||  ||| |||| |||||        || ||| ||||||||||| |||||||| |||||||||||||||||   |||| ||||   |||||||||||||    
T  14085102 ccacataagaaattattgttcttttttatttctgtcatcaaatgaatttgaaggtcccattccaccatttcttagaggttccataaatattgatctgtcc 14085003  T
Q  218 aaaaacaaattc 229  Q
    ||||| ||||||    
T  14085002 aaaaataaattc 14084991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 13928874 - 13928814
Alignment:
Q  18 cagataatgttccagagtggttttgggctaaactatcatcacaagagtgcaacaacatcaa 78  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||    
T  13928874 cagataatgttcccgagtggttttgggctaaactatcatcacaagagtgcagcagcatcaa 13928814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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