View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20568_low_3 (Length: 506)
Name: NF20568_low_3
Description: NF20568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20568_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 233 - 464
Target Start/End: Original strand, 488880 - 489111
Alignment:
| Q |
233 |
ttggtgtaattgataatagctgatgtaacattttttgggatggtttataagacatttacttacctttgaactgtgggtgtattgggcggggaaagaaatg |
332 |
Q |
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| T |
488880 |
ttggtgtaattgataataactgatgtaacattttttgggatggtttataagacacttacttacctttgaactgtgggtgtattgggcggggaaagaaatg |
488979 |
T |
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| Q |
333 |
aggaggtgaatgatgttgatggtgggtctgaatgcaacaccaccaacttggtgttgatactgtcgctgtattcataggaacctgtattcaaacctttgac |
432 |
Q |
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| T |
488980 |
aggaggtgaatgatgttgatggtgggtctgaatgcaacaccaccaacttggtgttgatactgtcgctgtattcataggaacctgtattcaaacctttgac |
489079 |
T |
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| Q |
433 |
atgtgtttgggactcgagagtttagtatgttt |
464 |
Q |
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| T |
489080 |
atgtgtttgggactcgagagtttactatgttt |
489111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 488662 - 488835
Alignment:
| Q |
15 |
atcaaagtattaggaggatcaagaaacgcaacaacatcttgttcatccaaataagaccttttaccatttggaagaatttcaaatggtttatcatcccaag |
114 |
Q |
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| T |
488662 |
atcaaagtattaggaggatcaagaaacgcaacaacatcttgttcatccaaataagaccttttaccatttggaagaatttcaaatggtttatcatcccaag |
488761 |
T |
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| Q |
115 |
gagatacattaacttcattgcttccagacacagcactgttttcccatctagattcaacgactctctttctatat |
188 |
Q |
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| T |
488762 |
gagatacattaacttcattgcttccagacacagcaccgttttcccatctagattcaacgactctctttctatat |
488835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 376 - 464
Target Start/End: Original strand, 514815 - 514903
Alignment:
| Q |
376 |
caacttggtgttgatactgtcgctgtattcataggaacctgtattcaaacctttgacatgtgtttgggactcgagagtttagtatgttt |
464 |
Q |
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| T |
514815 |
caacttggtgttgatactgtcgctgtattcataggaacctgtattcaaacctttgacatgtgtttgggactcgagagtttactatgttt |
514903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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