View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20568_low_5 (Length: 491)

Name: NF20568_low_5
Description: NF20568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20568_low_5
NF20568_low_5
[»] chr6 (4 HSPs)
chr6 (1-491)||(34216643-34217141)
chr6 (233-288)||(31437549-31437604)
chr6 (336-447)||(31437661-31437772)
chr6 (146-180)||(14385448-14385482)
[»] chr3 (3 HSPs)
chr3 (52-281)||(21093356-21093584)
chr3 (53-104)||(14679836-14679887)
chr3 (339-447)||(32239658-32239766)
[»] chr7 (3 HSPs)
chr7 (186-352)||(11482732-11482906)
chr7 (52-133)||(11482902-11482983)
chr7 (383-447)||(11482645-11482709)
[»] chr4 (2 HSPs)
chr4 (78-181)||(19551447-19551550)
chr4 (145-180)||(3009039-3009074)
[»] chr8 (3 HSPs)
chr8 (446-491)||(14621941-14621986)
chr8 (146-180)||(17271738-17271772)
chr8 (145-181)||(45270546-45270582)
[»] scaffold0061 (1 HSPs)
scaffold0061 (52-104)||(38085-38137)
[»] scaffold0017 (1 HSPs)
scaffold0017 (52-104)||(160642-160694)
[»] chr2 (2 HSPs)
chr2 (52-104)||(20380961-20381013)
chr2 (52-102)||(25976639-25976689)
[»] scaffold0567 (1 HSPs)
scaffold0567 (145-180)||(839-874)
[»] scaffold0490 (1 HSPs)
scaffold0490 (53-104)||(12090-12141)
[»] scaffold0125 (1 HSPs)
scaffold0125 (53-104)||(31435-31486)
[»] chr5 (1 HSPs)
chr5 (227-287)||(13644669-13644729)


Alignment Details
Target: chr6 (Bit Score: 438; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Original strand, 34216643 - 34217141
Alignment:
Q  1 aaacatcattaagtggtgtagaagagagtgtctgttcttgcaacagagatatatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34216643 aaacatcattaagtggtgtagaagagagtgtctgttcttgcaacagagacatatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaacc 34216742  T
Q  101 aaacagatccagatagaagcgtgagtctgcttctgtgaatactaattaaaatccttcgtccattgggagagacgaaggagatctggcttcaaatcaatgg 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34216743 aaacggatccagatagaagcgtgagtctgcttctgtgaatactaattaaaatccttcgtccattgggagagacgaaggagatctggcttcaaatcaatgg 34216842  T
Q  201 taccagccgaccaaattttttgtaagtcctctgccgactcaaaatgaaaatcgtaatagcccctgccaagcggtaccattttccatttgttca------- 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||           
T  34216843 taccagccgaccaaattttttgtaagtcctctgccgactcaaaatgaaaatcgtaatagcccatgccaagcggtaccattttccatttattcacagtctt 34216942  T
Q  294 -catacttttccaagcttagtaaccaaatcatgctccatttatggcttgtcgcccttattcaaagttagacgtcaccagagagcattttgacattccgcc 392  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||    
T  34216943 ccatacttttccaagcttagtaaccaaatcatgctccatttatggcttgtcgcccttattcaaggtcagacgtccccagagagcattttgacattccgcc 34217042  T
Q  393 aatccttttgagtattctacctgaccaattctgatacaaagcgcgtcacccttgaaacattatgattcatatatgttttagatctatttcatgtatcac 491  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34217043 aatcctttcgagtattctacctgaccaattctgatacaaagcgcgtcacccttgaaacattatgattcatatatgttttagatctatttcatgtatcac 34217141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 31437549 - 31437604
Alignment:
Q  233 gccgactcaaaatgaaaatcgtaatagcccctgccaagcggtaccattttccattt 288  Q
    |||||||||||||||||||| ||||| ||||| |||||||  ||||||||||||||    
T  31437549 gccgactcaaaatgaaaatcataatatccccttccaagcgacaccattttccattt 31437604  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 447
Target Start/End: Original strand, 31437661 - 31437772
Alignment:
Q  336 ggcttgtcgcccttattcaaagttagacgtcaccagagagcattttgacattccgccaatccttttgagtattctacctgaccaattctgatacaaagcg 435  Q
    ||||| |||||||||  |||||| |||| || || ||| ||||| ||||| || || || || |||||||||||| |||| |||||| | ||||||||||    
T  31437661 ggcttatcgcccttaaccaaagtcagacttccccggagggcattctgacagtcagctaaaccctttgagtattcttcctgcccaattataatacaaagcg 31437760  T
Q  436 cgtcacccttga 447  Q
    | ||||| ||||    
T  31437761 catcacctttga 31437772  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 14385448 - 14385482
Alignment:
Q  146 ttaaaatccttcgtccattgggagagacgaaggag 180  Q
    |||||||||||||||||||||||||| ||||||||    
T  14385448 ttaaaatccttcgtccattgggagaggcgaaggag 14385482  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 52 - 281
Target Start/End: Complemental strand, 21093584 - 21093356
Alignment:
Q  52 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaacagatccagatagaagcgtgagtctgcttctgtgaatactaattaaaa 151  Q
    |||||||||||| ||  ||||| || |||||||||| ||||| || ||||| | |||||| || ||||| |||||||| ||||||||||| | |  |||     
T  21093584 tatttccttcaaagtacgttcctgctaatattcttgtggtaattcgaccaagcggatccaaatggaagcatgagtctggttctgtgaataatgagaaaag 21093485  T
Q  152 tccttcgtccattgggagagacgaaggagatctggcttcaaatcaatggtaccagccgaccaaattttttgtaagtcctctgccgactcaaaatgaaaat 251  Q
    || ||   ||||||||||| |||||||||| ||||| | ||||  || |||| |||||||||||| ||  |||||||||| |||||||||||||| || |    
T  21093484 tcttttagccattgggagaaacgaaggagacctggccttaaattgatagtactagccgaccaaatattccgtaagtcctcggccgactcaaaatg-aagt 21093386  T
Q  252 cgtaatagcccctgccaagcggtaccattt 281  Q
    | ||||| ||||| |||||||| |||||||    
T  21093385 cataataaccccttccaagcggcaccattt 21093356  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 14679836 - 14679887
Alignment:
Q  53 atttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 104  Q
    ||||||||||||||  ||||||||||||| ||||||||||| ||||||||||    
T  14679836 atttccttcaatgtacgttcccgccaatactcttgcggtaactcaaccaaac 14679887  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 447
Target Start/End: Original strand, 32239658 - 32239766
Alignment:
Q  339 ttgtcgcccttattcaaagttagacgtcaccagagagcattttgacattccgccaatccttttgagtattctacctgaccaattctgatacaaagcgcgt 438  Q
    |||||||| ||||||||||| || | || ||| || ||||| ||||||||   ||||||||| || |||||| |||| ||| |||  |||||||| || |    
T  32239658 ttgtcgcctttattcaaagtcagtcttccccacagggcattctgacattcaaacaatcctttagaatattcttcctgtccatttcgaatacaaagagcat 32239757  T
Q  439 cacccttga 447  Q
    |||||||||    
T  32239758 cacccttga 32239766  T

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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 186 - 352
Target Start/End: Complemental strand, 11482906 - 11482732
Alignment:
Q  186 gcttcaaatcaatggtaccagccgaccaaattttttgtaagtcctctgccgactcaaaatgaaaatcgtaatagcccctgccaagcggtaccattttcca 285  Q
    |||||||||||| | ||||||  |||||| ||||| |||||||||||||||||| || ||||||||||||||||||||| | |||  |||||||||||||    
T  11482906 gcttcaaatcaacgataccagttgaccaattttttcgtaagtcctctgccgactaaatatgaaaatcgtaatagccccttcaaagtagtaccattttcca 11482807  T
Q  286 tttgttca--------catacttttccaagcttagtaaccaaatcatgctccatttatggcttgtcgcccttatt 352  Q
    ||| ||||        ||||||||||| |||||||||||| |||  ||  | || |||||||||| |||||||||    
T  11482806 tttattcatagtcttccatacttttccgagcttagtaaccgaattctgagctatgtatggcttgttgcccttatt 11482732  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 11482983 - 11482902
Alignment:
Q  52 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaacagatccagatagaagcgtgagtctgcttc 133  Q
    ||||||||||  ||||||||||| |||||||||||||||||| ||||||| || | | ||||||||||| ||||||||||||    
T  11482983 tatttccttcggtgtttgttcccaccaatattcttgcggtaattcaaccatacgggttcagatagaagcatgagtctgcttc 11482902  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 447
Target Start/End: Complemental strand, 11482709 - 11482645
Alignment:
Q  383 acattccgccaatccttttgagtattctacctgaccaattctgatacaaagcgcgtcacccttga 447  Q
    |||||| |||||| |||||| ||||||| |||||||||||||||| || | ||||||| ||||||    
T  11482709 acattctgccaatacttttgtgtattcttcctgaccaattctgatgcataacgcgtcaaccttga 11482645  T

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Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 78 - 181
Target Start/End: Complemental strand, 19551550 - 19551447
Alignment:
Q  78 aatattcttgcggtaagtcaaccaaacagatccagatagaagcgtgagtctgcttctgtgaatactaattaaaatccttcgtccattgggagagacgaag 177  Q
    |||||||||| || || |||||||| |  ||||| || ||||||||||| ||||||| |||||| | |||||| ||||||||| |||| |||||||||||    
T  19551550 aatattcttggggcaattcaaccaagcgaatccaaatggaagcgtgagtttgcttctatgaataatgattaaagtccttcgtctattgtgagagacgaag 19551451  T
Q  178 gaga 181  Q
    ||||    
T  19551450 gaga 19551447  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 180
Target Start/End: Original strand, 3009039 - 3009074
Alignment:
Q  145 attaaaatccttcgtccattgggagagacgaaggag 180  Q
    ||||||||||||||||||||||||||| ||||||||    
T  3009039 attaaaatccttcgtccattgggagaggcgaaggag 3009074  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 446 - 491
Target Start/End: Complemental strand, 14621986 - 14621941
Alignment:
Q  446 gaaacattatgattcatatatgttttagatctatttcatgtatcac 491  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||    
T  14621986 gaaacattatgattcttatatgttttagatcaatttcatgtatcac 14621941  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 180
Target Start/End: Complemental strand, 17271772 - 17271738
Alignment:
Q  146 ttaaaatccttcgtccattgggagagacgaaggag 180  Q
    |||||||||||||||||||||||||| ||||||||    
T  17271772 ttaaaatccttcgtccattgggagaggcgaaggag 17271738  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 45270546 - 45270582
Alignment:
Q  145 attaaaatccttcgtccattgggagagacgaaggaga 181  Q
    ||||||||||||||||||||| || ||||||||||||    
T  45270546 attaaaatccttcgtccattgagaaagacgaaggaga 45270582  T

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Target: scaffold0061 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 38137 - 38085
Alignment:
Q  52 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 104  Q
    |||||||||||||||| | ||||||||||| ||||||||||| || |||||||    
T  38137 tatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaac 38085  T

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Target: scaffold0017 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 160642 - 160694
Alignment:
Q  52 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 104  Q
    |||||||||||||||| | ||||||||||| ||||||||||| || |||||||    
T  160642 tatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaac 160694  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 20381013 - 20380961
Alignment:
Q  52 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 104  Q
    |||||||||||||||| | ||||||||||| ||||||||||| || |||||||    
T  20381013 tatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaac 20380961  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 25976639 - 25976689
Alignment:
Q  52 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaa 102  Q
    |||||||||||| ||| ||||||||||||| ||||||||||| || |||||    
T  25976639 tatttccttcaaggttcgttcccgccaatactcttgcggtaactccaccaa 25976689  T

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Target: scaffold0567 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 180
Target Start/End: Complemental strand, 874 - 839
Alignment:
Q  145 attaaaatccttcgtccattgggagagacgaaggag 180  Q
    ||||||||||||||||||||||||||| ||||||||    
T  874 attaaaatccttcgtccattgggagaggcgaaggag 839  T

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Target: scaffold0490 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 12141 - 12090
Alignment:
Q  53 atttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 104  Q
    ||||||||||||||  | ||||||||||| ||||||||||| ||||||||||    
T  12141 atttccttcaatgtacgctcccgccaatactcttgcggtaactcaaccaaac 12090  T

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Target: scaffold0125 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 31435 - 31486
Alignment:
Q  53 atttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 104  Q
    ||||||||||||||   |||||||||||| ||||||||||| ||||||||||    
T  31435 atttccttcaatgtacattcccgccaatactcttgcggtaactcaaccaaac 31486  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 287
Target Start/End: Original strand, 13644669 - 13644729
Alignment:
Q  227 tcctctgccgactcaaaatgaaaatcgtaatagcccctgccaagcggtaccattttccatt 287  Q
    ||||| ||||| ||||||||||| || ||||| ||| ||||||| || |||||||||||||    
T  13644669 tcctccgccgagtcaaaatgaaagtcataataccccttgccaagaggcaccattttccatt 13644729  T

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