View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20568_low_7 (Length: 475)

Name: NF20568_low_7
Description: NF20568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20568_low_7
NF20568_low_7
[»] chr4 (10 HSPs)
chr4 (80-466)||(48882981-48883367)
chr4 (80-408)||(48479035-48479363)
chr4 (84-408)||(48470673-48470997)
chr4 (86-404)||(48487508-48487826)
chr4 (1-87)||(48883574-48883659)
chr4 (1-84)||(48470261-48470344)
chr4 (406-466)||(48478916-48478976)
chr4 (1-84)||(48478623-48478706)
chr4 (406-466)||(48470554-48470614)
chr4 (1-84)||(48487089-48487175)
[»] chr7 (1 HSPs)
chr7 (22-87)||(38816900-38816965)


Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 80 - 466
Target Start/End: Original strand, 48882981 - 48883367
Alignment:
Q  80 caccagagtaaagtttcaaaatccttctgttacatttcttttatcaatctacactggaggacaaaattcttcactttttaactcattgttaaaccaatct 179  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48882981 caccagagtaaagcttcaaaatccttctgttacatctcttttatcaatctacactggaggacaaaattcttcactttttaactcattgttaaaccaatct 48883080  T
Q  180 tcttatagaaaatctttcattgattcctccatcagaaaggcaagacgatttgactttcaaggcatagacttttgtggtgcagggccaaaacagggcaaag 279  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48883081 tcttatagaaaatctttcattgattcctccatcagaacggcaagacgatttgactttcaaggcatagacttttgtggtgcagggctaaaacagggcaaag 48883180  T
Q  280 atcttgtcaatttcacaacccttttgaaagagtggtgagttgcgataacttctgaggcaagaaacactaaaagatcagaattagtgttgctgatgacagg 379  Q
     |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48883181 ttcttgtcaatttcacaacccttttgaaagagtggcgagttgcgataacttctgaggcaagtaacactaaaagatcagaattagtgttgctgatgacagg 48883280  T
Q  380 ttattatcttaaaccttcagattcccttactatcttcctaaaagggacaatgtcacacgttttcatgcacctttatatggttcatct 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48883281 ttattatcttaaaccttcagattcccttactatcttcctaaaagggacaatgtcacacgttttcatgcacctttatatggttcatct 48883367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 80 - 408
Target Start/End: Complemental strand, 48479363 - 48479035
Alignment:
Q  80 caccagagtaaagtttcaaaatccttctgttacatttcttttatcaatctacactggaggacaaaattcttcactttttaactcattgttaaaccaatct 179  Q
    ||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  48479363 caccagagtaaagcttcaaaatccttctgttacatctcttctatcaatctacactggaggagaaaattcttcactttttaactcgttgataaaccaatct 48479264  T
Q  180 tcttatagaaaatctttcattgattcctccatcagaaaggcaagacgatttgactttcaaggcatagacttttgtggtgcagggccaaaacagggcaaag 279  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48479263 tcttatagaaaatctttcattgattcctccatcagaacggcaagacgatttgactttcaaggcatagacttttgtggtgcagggccaaaacagggcaaag 48479164  T
Q  280 atcttgtcaatttcacaacccttttgaaagagtggtgagttgcgataacttctgaggcaagaaacactaaaagatcagaattagtgttgctgatgacagg 379  Q
    ||||||| |||||| |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  48479163 atcttgttaatttcgcaacccttttgaaagagtggcgaattgcaataacttctgaggcaagaaacactaaaagatcagaattagtgttggtgatgacagg 48479064  T
Q  380 ttattatcttaaaccttcagattccctta 408  Q
    ||||||||||||| |||||||||||||||    
T  48479063 ttattatcttaaagcttcagattccctta 48479035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 84 - 408
Target Start/End: Complemental strand, 48470997 - 48470673
Alignment:
Q  84 agagtaaagtttcaaaatccttctgttacatttcttttatcaatctacactggaggacaaaattcttcactttttaactcattgttaaaccaatcttctt 183  Q
    ||||||||| ||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48470997 agagtaaagcttcaaaacccatctgttacatctcttttatcaatctacactggaggacaaaattcttcactttttaactcattgataaaccaatcttctt 48470898  T
Q  184 atagaaaatctttcattgattcctccatcagaaaggcaagacgatttgactttcaaggcatagacttttgtggtgcagggccaaaacagggcaaagatct 283  Q
    |||||||||||||||||| ||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48470897 atagaaaatctttcattggttcctccatcagaacagcaagacaatttgactttcaaggcatagacttttgtggtgcagtgccaaaacagggcaaagatct 48470798  T
Q  284 tgtcaatttcacaacccttttgaaagagtggtgagttgcgataacttctgaggcaagaaacactaaaagatcagaattagtgttgctgatgacaggttat 383  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  48470797 tgtcaatttcgcaacccttttgaaagagtggcgagttgcgataacttctgaggcaagtaacactaaaagatcagaattagtgttggtgatgacaggttat 48470698  T
Q  384 tatcttaaaccttcagattccctta 408  Q
    ||||||||| |||||||||||||||    
T  48470697 tatcttaaagcttcagattccctta 48470673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 86 - 404
Target Start/End: Complemental strand, 48487826 - 48487508
Alignment:
Q  86 agtaaagtttcaaaatccttctgttacatttcttttatcaatctacactggaggacaaaattcttcactttttaactcattgttaaaccaatcttcttat 185  Q
    ||||||| |||||||||| |||||||||  |||| | |||||||||||   |  | |||| |||||| |||||  |||| || |||||||||||||| |     
T  48487826 agtaaagcttcaaaatccatctgttacaactcttctttcaatctacaccaaaacagaaaactcttcagttttttcctcactgataaaccaatcttctaac 48487727  T
Q  186 agaaaatctttcattgattcctccatcagaaaggcaagacgatttgactttcaaggcatagacttttgtggtgcagggccaaaacagggcaaagatcttg 285  Q
    || ||||||||||||||||| ||||||| ||  ||||||   | ||  |||||||||||||||||| |||| |    |||||| || ||||| || ||||    
T  48487726 aggaaatctttcattgattcttccatcaaaacagcaagaaactatgggtttcaaggcatagactttcgtggagttaagccaaagcaaggcaatgaacttg 48487627  T
Q  286 tcaatttcacaacccttttgaaagagtggtgagttgcgataacttctgaggcaagaaacactaaaagatcagaattagtgttgctgatgacaggttatta 385  Q
      |||||  ||||||||||||| || | | || | |||||||||||||| |||||||||||||||| | |||| ||||| ||| ||||| ||||||||||    
T  48487626 caaatttggcaacccttttgaaggaattgcgaatagcgataacttctgaagcaagaaacactaaaaaaccagagttagttttggtgatggcaggttatta 48487527  T
Q  386 tcttaaaccttcagattcc 404  Q
    ||||||| |||||||||||    
T  48487526 tcttaaagcttcagattcc 48487508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 48883659 - 48883574
Alignment:
Q  1 tcatcaaaattaacccaagtagatgcaacagtgaaataattcaccacaaatttctcattataatatgaaactactccatcaccagag 87  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  48883659 tcatcaaaatta-cccaagtagatgcaacagtgaaataattcaccacaaatgtctcattataatatgaaactactccatcatcagag 48883574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 48470261 - 48470344
Alignment:
Q  1 tcatcaaaattaacccaagtagatgcaacagtgaaataattcaccacaaatttctcattataatatgaaactactccatcacca 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||  |||||||||||||||||||    
T  48470261 tcatcaaaattaacccaagtagatgcaacagtgaaataattcaccacaaaagtgtcattataacgtgaaactactccatcacca 48470344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 406 - 466
Target Start/End: Complemental strand, 48478976 - 48478916
Alignment:
Q  406 ttactatcttcctaaaagggacaatgtcacacgttttcatgcacctttatatggttcatct 466  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48478976 ttactatcttcctaaaagggacagtgtcacacgttttcatgcacctttatatggttcatct 48478916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 48478623 - 48478706
Alignment:
Q  1 tcatcaaaattaacccaagtagatgcaacagtgaaataattcaccacaaatttctcattataatatgaaactactccatcacca 84  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||  | |||||||||  |||||||||||||||||||    
T  48478623 tcatcaaaattaacccatgtagattcaacagtgaaataattcaccacaaaagtgtcattataacgtgaaactactccatcacca 48478706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 406 - 466
Target Start/End: Complemental strand, 48470614 - 48470554
Alignment:
Q  406 ttactatcttcctaaaagggacaatgtcacacgttttcatgcacctttatatggttcatct 466  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||    
T  48470614 ttactatcttcctaaaagggacagtgtcacacgttttcatgcagctttatacggttcatct 48470554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 48487089 - 48487175
Alignment:
Q  1 tcatcaaaattaacccaagtag---atgcaacagtgaaataattcaccacaaatttctcattataatatgaaactactccatcacca 84  Q
    ||||||||||||||||||||||   |||||||||| |||||||||||||||||  | ||||||||| ||||||||||||| ||||||    
T  48487089 tcatcaaaattaacccaagtagtggatgcaacagtaaaataattcaccacaaaagtatcattataacatgaaactactccgtcacca 48487175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 38816965 - 38816900
Alignment:
Q  22 gatgcaacagtgaaataattcaccacaaatttctcattataatatgaaactactccatcaccagag 87  Q
    |||||||||||||||||||||||||||||    ||||||||| |||||||||||||||||||||||    
T  38816965 gatgcaacagtgaaataattcaccacaaaagcgtcattataacatgaaactactccatcaccagag 38816900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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